Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01458 ATGCCGGTGAATCTGACGGCGAATTCGATTCCAGCGATCATCGCCGGCGATGTGAACTCAAAGCCGCTGGTGCAGGTGCTGGATATCAAGTTGTTCTCTGGTAGTAACAATACCTCGCAGAAGGAGCGATACCGCGTCTTACTCTCCGATGCCGTGACGACTCAGCATGCCATGCTTGCTACTCAGCTTAACGATCGAGTCAAGTCCGGTCGAGTGAAGACCGGTTCCGTTGTTCAGCTCATCGAATATATGTGCAGCAATGTTCAAAACCGCAACATTATTGTGGTGCTGAACATGGAAACTATAATACCGGAATGCGACATTATCGGGAATCCAAGGTCATTTGCTGAATGTAGTTCGGCAACTCAGAATCCATTGCATAATGATGTGGAACACCCAGCCAGGAACGGCAGCAATAATCTGCCCACCCAAAAGCTGCGTAATGACCCACATATTTGCCCTACTGTTCAACCACCTTATGAACCTCCCCCTGTTTATAGAAATCATGGTTCTATTATGAAGAATGAGGCTCCAGCACGCATAATTCCCATTGCTGCTTTGAATCCTTATCAGGGGAGGTGGGCTATCAAAGCTAGAGTTACTGCAAAGGGGGATCTCCGGCGATACAATAATGCTAAAGGAGATGGCAAGGTTTTCTCATTTGACCTCCTTGATTCTAGTGGAGGGGAAATACGAGTGACCTGCTTCAATGCTGTTGTTGATCGCTTCTATGATGCTATTCAGATTGGTAAAGTGTATATGATATCAAAAGGCAGCTTGAAACCTGCACAGAAGAACTTCAATCATTTGAAGAATGATTGGGAGATATTTTTAGACTCCAATTCAACCGTGGATCTTTGCCCAGATGAAGATGGTTCCATACCTAAGCAGCAATTTTCCTTTAGGAATATTAGTGACATTGAAATTGTGGAGAGTAACTCAATAATTGATGTTGTAGGGATTGTGACATCTGTGAATCCCTCAGTTCCAATATTGAGAAAGAATGGCATGGAAACCCAGAGAAGAATTTTAAATCTTAAAGATCAGTCTGCTCGTAGTGTTGAACTTACACTGTGGGGTGATTTTTGCAACCGGGAAGGTCAAAAGCTACAGGAGATGGTTGGTACAGGCATTTTTCCTGTTTTAGCTGTCAAAGCTGCAAAAGTTAGTGACTTCAGTGGAAAATCCATTGGGACAATCTCCACCACTCAGCTGTTCATAAATCCAGATTTTCCTGAAGCTCATAGGTTGAGAGAATGGTTTGCTCGTGGTGGAAAGGATGCTGCTACTTTTTCTATATCCAGAGATGTCCCTGGAGGACCTAAAACTGATATCCGTAAAACTGTGAGTCAGATCAAGGATGAAGGTCTTGGAAGGTCAGATAAACCTGACTGGGTCACAGTGAGGGCAACTATCTCTTTCATCAAGACAGACACTTTCTGCTACACTGCTTGCCCATTGATTATTGGAGATCGACAGTGCAATAAGAAAGTCGCAAGGTCAGGAACTTCAAGATGGCTATGTGACAGGTGCAATCAAGAATTTGATGAGTGTGATTACAGATACCTTCTTCAAGCTCAAATCCAAGATCATACTGGAGTGACTTGGGTGACTGCATTCCAGGAATGTGGAGAAGAGATATTAGGTTATCCAGCGAAGGAGCTTTACATATTAAAGTATGAAGAGCACGATGATGAGAGGTTTGCAGAAATAATTCGGGGAAGACTGTTTAATCAATATCTATTTAGGCTGAAAATCAAAGAGGAATTGTATGGTGATGAACAGCGAGTTAAGATTATTGTTGTGAAGGCAGATAAGGTGGATTACTCTACTGAGAGCAGATACGTGCTAGATTCTCTTTTAAAATTGATTAGGTAA 1878 0.4286 MPVNLTANSIPAIIAGDVNSKPLVQVLDIKLFSGSNNTSQKERYRVLLSDAVTTQHAMLATQLNDRVKSGRVKTGSVVQLIEYMCSNVQNRNIIVVLNMETIIPECDIIGNPRSFAECSSATQNPLHNDVEHPARNGSNNLPTQKLRNDPHICPTVQPPYEPPPVYRNHGSIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSSGGEIRVTCFNAVVDRFYDAIQIGKVYMISKGSLKPAQKNFNHLKNDWEIFLDSNSTVDLCPDEDGSIPKQQFSFRNISDIEIVESNSIIDVVGIVTSVNPSVPILRKNGMETQRRILNLKDQSARSVELTLWGDFCNREGQKLQEMVGTGIFPVLAVKAAKVSDFSGKSIGTISTTQLFINPDFPEAHRLREWFARGGKDAATFSISRDVPGGPKTDIRKTVSQIKDEGLGRSDKPDWVTVRATISFIKTDTFCYTACPLIIGDRQCNKKVARSGTSRWLCDRCNQEFDECDYRYLLQAQIQDHTGVTWVTAFQECGEEILGYPAKELYILKYEEHDDERFAEIIRGRLFNQYLFRLKIKEELYGDEQRVKIIVVKADKVDYSTESRYVLDSLLKLIR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01458 625 SUPERFAMILY Nucleic acid-binding proteins 446 622 IPR012340 -
Pte11g01458 625 MobiDBLite consensus disorder prediction 124 149 - -
Pte11g01458 625 SUPERFAMILY Nucleic acid-binding proteins 298 426 IPR012340 -
Pte11g01458 625 CDD RPA1N 10 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pte11g01458 625 Gene3D - 4 116 IPR012340 -
Pte11g01458 625 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pte11g01458 625 NCBIfam replication factor-a protein 1 (rpa1) 6 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte11g01458 625 Pfam Replication factor-A C terminal domain 465 615 IPR013955 -
Pte11g01458 625 Pfam Replication protein A OB domain 304 408 IPR031657 -
Pte11g01458 625 CDD RPA1_DBD_C 449 620 IPR047192 -
Pte11g01458 625 Pfam OB-fold nucleic acid binding domain 195 267 IPR004365 GO:0003676
Pte11g01458 625 Gene3D - 293 432 IPR012340 -
Pte11g01458 625 FunFam Replication protein A subunit 432 623 - -
Pte11g01458 625 FunFam Replication protein A subunit 4 116 - -
Pte11g01458 625 CDD RPA1_DBD_B 315 421 - -
Pte11g01458 625 Gene3D - 180 290 IPR012340 -
Pte11g01458 625 FunFam Replication protein A subunit 180 289 - -
Pte11g01458 625 MobiDBLite consensus disorder prediction 124 146 - -
Pte11g01458 625 FunFam Replication protein A subunit 293 431 - -
Pte11g01458 625 PANTHER REPLICATION FACTOR A 1, RFA1 194 596 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte11g01458 625 SUPERFAMILY Nucleic acid-binding proteins 180 293 IPR012340 -
Pte11g01458 625 Gene3D - 433 623 IPR012340 -
Pte11g01458 625 CDD RPA1_DBD_A 183 286 - -
Pte11g01458 625 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01458 Pte-Chr11 33064021 33067192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01458 26 622 Core DNA Replication Machinery Family AT2G06510 70.130 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01458 K07466 - aew:130789989 965.681