Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte11g01431 | GCCATACGGGATATGGTTGTTCGAGGGGCACCTGCCATTGCCATTGCAGCTGCCCTTTCTCTGGCTGTAGAAGTCTTCAATTTAGAGTCTTTCAATGGATCCCCTGACAATGCTGCTTCCTTCCTTCAAAAGAAATTGGAATATCTTGTCGCCAGTCGACCAACAGCAGTTAATCTTTCAGATGCTGCAACAAAACTGAAAGAAGTCATAATTAACGCCGCGGCTACTGCTTCACAGGCTCAGAATGTTTTCCAGGCATATATAGAGGCTTCTGAAATTATGCTGAAAGATGATGTTGCTTCCAACAAAGCAATTGGCTCCCATGGAGCTAGTTTTCTTCTCCACGGAAAGAACAAGTCAAATCTTTCTGTTTTGACTCATTGTAACACTGGGAGCTTGGCCACAGCTGGATATGGCACTGCACTTGGTGTGATACGTGCACTTCATACTAAAGGAGTCCTTGAAAGAGCTTATTGCACAGAAACTCGTCCTTTCAATCAAGGATCAAGGCTCACTGCATTCGAGTTGGTGCATGAAAACATACCTGCAACTCTTATAGCAGATTCTGGAGCAGATCGTGTGGCATCAAACGGAGACACCGCTAACAAAATTGGAACCTATAGCCTAGCTTTGTGTGCCAAGAGCCATGAGATACCTTTCTATGTAGCTGCACCACTGACTTCTATTGATTTATCACTTTCTTCTGGAGAAGAAATCATCATTGAGGAAAGATCTCCTAAAGAGCTACTGCACGCACGTGGAGGACTAGGAGAACAGGTTGCTGCATCTGGAATTTCTGTCTGGAACCCAGCTTTTGATGTTACACCTGCTAATCTGATAGCTGGGATCATTACAGAAAAGGTCGTTCCCGTTGCC | 876 | 0.4475 | AIRDMVVRGAPAIAIAAALSLAVEVFNLESFNGSPDNAASFLQKKLEYLVASRPTAVNLSDAATKLKEVIINAAATASQAQNVFQAYIEASEIMLKDDVASNKAIGSHGASFLLHGKNKSNLSVLTHCNTGSLATAGYGTALGVIRALHTKGVLERAYCTETRPFNQGSRLTAFELVHENIPATLIADSGADRVASNGDTANKIGTYSLALCAKSHEIPFYVAAPLTSIDLSLSSGEEIIIEERSPKELLHARGGLGEQVAASGISVWNPAFDVTPANLIAGIITEKVVPVA | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte11g01431 | 292 | Gene3D | - | 100 | 289 | IPR042529 | - | |
| Pte11g01431 | 292 | Gene3D | - | 1 | 99 | IPR027363 | - | |
| Pte11g01431 | 292 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 1 | 289 | - | - | |
| Pte11g01431 | 292 | FunFam | Methylthioribose-1-phosphate isomerase | 1 | 154 | - | - | |
| Pte11g01431 | 292 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 1 | 287 | IPR011559 | GO:0044249 | |
| Pte11g01431 | 292 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 1 | 289 | IPR005251 | - | |
| Pte11g01431 | 292 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 1 | 287 | IPR037171 | - | |
| Pte11g01431 | 292 | Pfam | Initiation factor 2 subunit family | 190 | 287 | IPR000649 | GO:0044237 | |
| Pte11g01431 | 292 | Pfam | Initiation factor 2 subunit family | 7 | 189 | IPR000649 | GO:0044237 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte11g01431 | Pte-Chr11 | 32840806 | 32843113 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte11g01431 | 4 | 289 | Eukaryotic Initiation Factors Gene Family | AT2G05830 | 75.908 | 3.60e-154 | 432 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte11g01431 | K08963 | - | cave:132165332 | 464.151 |