Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01428 ATGGATTTGCCGCAGAATCCATTGCCCATGAACCTGCTTGGTTTTGTTGACTCCAACAATATCATTCCTGATCCCCAACATTACCATCATCCTATCCACCAGTACTCCATCCTCGAACCCTACCATCAACAAGAATCGTCTGAAACCACCATGCCCAATAACCTGCTGCTTTCAAGCCCACAACACCATGGCTACCAACCTTACGACTACCACCATCAAGAACCATCCTTATTTTTGCCAGTAACCACTTTTCCATCCCCAGCCTCAAACGTGGGGTCCAGTCATACTACTGTTTCTCCTTCCACACCCGTCCCCGCAGGGTACCGATTTTGTCCTACAGATCTTGAGCTTCTCCAATTTTATCTGAAGAAAAAGATTGAAGGGCAACCTTTGCCTTGTGACCTGATTAGTGAGGTCTGTCTGTACGAGGAGCATCCAGAGAGTCTTAAGGGTATGTCTCTTGGTCAAGCATCCAGAAATGTAATGACAATGAATGGTACTTCTTTACTTCAACTAAGAGGAGGTACAAAAATGGCAGTAGACCTAGTCGTTCGGCCATTGGTGGATACTGGAAGGCAACGGCATCCGACAAAATTATCAAATGTGGAGAGAAAATTATTGGATATAGAAAAGGACTAG 639 0.4507 MDLPQNPLPMNLLGFVDSNNIIPDPQHYHHPIHQYSILEPYHQQESSETTMPNNLLLSSPQHHGYQPYDYHHQEPSLFLPVTTFPSPASNVGSSHTTVSPSTPVPAGYRFCPTDLELLQFYLKKKIEGQPLPCDLISEVCLYEEHPESLKGMSLGQASRNVMTMNGTSLLQLRGGTKMAVDLVVRPLVDTGRQRHPTKLSNVERKLLDIEKD* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01428 212 Gene3D NAC domain 113 165 IPR036093 GO:0003677|GO:0006355
Pte11g01428 212 Pfam No apical meristem (NAM) protein 105 153 IPR003441 GO:0003677|GO:0006355
Pte11g01428 212 SUPERFAMILY NAC domain 98 153 IPR036093 GO:0003677|GO:0006355
Pte11g01428 212 ProSiteProfiles NAC domain profile. 104 212 IPR003441 GO:0003677|GO:0006355
Pte11g01428 212 PANTHER NAC TRANSCRIPTION FACTOR 56 104 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01428 Pte-Chr11 32811153 32811943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01428 104 154 NAC Transcription Factor Family AT5G17260 50.980 2.65e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte11g01428 NAM 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01428 - - rvl:131332988 65.4698