Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01424 ATGTACCTATCTAAATGTTTGTCTAATTTGAAACCATTTCTGAGGAACTACAGGTATGTGGGAAACATCCATTCGGATGTTACGGAAGCCCTACTTCAAGAGGTGTTTGCAAGTGCTGGTATTGTTGAGTCATGCAAGCTCATCAGGAAAGAGAAGTCATCCTATGGGTTTGTTGATTACTACGATCGCAGATCTGCAACCATTGCAATCCTCACTCTCAATGGAAGAAATCTATTTGGACAGCCTATTAAAGTTAACTGGGCATATGCTAGTAACCAGAGAGAAGACACAGCAGGGCATTATAATGTCTTTGTTGGGGATCTTAGCCCGGAGGTTTCAGATGCAACATTGTTTAATTTCTTCTCTGTATTCCCTAGTTTGTCAGATGCGAAGGTCATGTGGGACCAGAAGACTGGGCGCTCAAGGGGATATGGGTTTGTTTCCTTTCGGAGCCAACAGGATGCTCAAAGTGCTATCAACGACTTAAATGGAAAGTGGCTGGGAAGTAGACAAATTCGTTGTAACTGGGCTACTAAAGGGGCAACCGCTGGTGATGACAAGCAAAGTTCAGATACCAAAAGTGTTGTGGAGTTGATGAATGTGATGTTGGAAGAATGTCAAGAGAAGAACAATGATGATGCTCCTGAGAATAATCAGCAATACACTACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTATTGATCTCCACCGTCATTTCCATGCCCTTGGTGCTGGTACCATTGAAGATGTTCGGATGCAGCGGGATAAAAGGTTTGGCTTTGTCAGATATAGCTCACATGTCGAAGCAGCTCTTGCTATACAGCTGGGCAATGCTGGGATTTTATTTGGCAAACCAATCAAGTGTTCATGGGGTAGCAAACCTACTCCTCCGGGAACAACATCAAAGCCTCTCCCCCCACCAGCAGCTGCATACATACCTGGCATTTCAGCATCTGATCTGGCAGCCTATGAACGGCACATAGCATTAAGCAAAATGGCAGGTGCTCAAGCCCTCATGCATCCGGTTCAGCATGCCCTTGAGCATTCAGGTATGGGGATAGGTCCTGCCGGAGCAAGTCAAGCTTTATACGATGGTGGATACCCTGGCGTCGCAAGTGCACATCATCTTATGTATTATCAGTAA 1152 0.4505 MYLSKCLSNLKPFLRNYRYVGNIHSDVTEALLQEVFASAGIVESCKLIRKEKSSYGFVDYYDRRSATIAILTLNGRNLFGQPIKVNWAYASNQREDTAGHYNVFVGDLSPEVSDATLFNFFSVFPSLSDAKVMWDQKTGRSRGYGFVSFRSQQDAQSAINDLNGKWLGSRQIRCNWATKGATAGDDKQSSDTKSVVELMNVMLEECQEKNNDDAPENNQQYTTVYVGNLAPEVTSIDLHRHFHALGAGTIEDVRMQRDKRFGFVRYSSHVEAALAIQLGNAGILFGKPIKCSWGSKPTPPGTTSKPLPPPAAAYIPGISASDLAAYERHIALSKMAGAQALMHPVQHALEHSGMGIGPAGASQALYDGGYPGVASAHHLMYYQ* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01424 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 296 IPR000504 GO:0003723
Pte11g01424 383 SUPERFAMILY RNA-binding domain, RBD 213 303 IPR035979 GO:0003676
Pte11g01424 383 Gene3D - 201 300 IPR012677 -
Pte11g01424 383 Gene3D - 15 95 IPR012677 -
Pte11g01424 383 Gene3D - 96 195 IPR012677 -
Pte11g01424 383 FunFam Oligouridylate-binding protein 1C 199 300 - -
Pte11g01424 383 SUPERFAMILY RNA-binding domain, RBD 19 94 IPR035979 GO:0003676
Pte11g01424 383 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 299 - -
Pte11g01424 383 SUPERFAMILY RNA-binding domain, RBD 94 181 IPR035979 GO:0003676
Pte11g01424 383 FunFam oligouridylate-binding protein 1-like isoform X2 99 194 - -
Pte11g01424 383 SMART rrm2_1 102 175 IPR003954 GO:0003676
Pte11g01424 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 90 IPR000504 GO:0003723
Pte11g01424 383 CDD RRM2_PUB1 100 179 - -
Pte11g01424 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Pte11g01424 383 SMART rrm1_1 17 86 IPR000504 GO:0003723
Pte11g01424 383 SMART rrm1_1 102 175 IPR000504 GO:0003723
Pte11g01424 383 SMART rrm1_1 223 292 IPR000504 GO:0003723
Pte11g01424 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Pte11g01424 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 289 IPR000504 GO:0003723
Pte11g01424 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01424 Pte-Chr11 32744540 32749191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01424 19 290 Eukaryotic Initiation Factors Gene Family AT3G16380 27.336 2.90e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01424 K13201 - jre:108986551 584.334