Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01421 ATGACAGAGGTAACGGCCATGGCAACTAGGAAAAGCGGGATATCAACTGGTAAGGGAGCAAAAAACTCGAACGAGGAAAACATTACTGTCAAAAATCATAATGAAGAAAGTCACGTATTTGCGTCGTGCTCTTTCTCTTCCCTCGGTCTGCACCCTACTTTATGCGACCAGCTCCGAGAGAGGATGGGATTCGAGGTACCCACCATCGTGCAAGCTCAGGCCATACCTGTTGTGATCTCCGGCCGTCATCTACTGGTTAATGCGGCTACTGGCACAGGCAAGACAGTAGCGTATTTGGCTCCAATTATTCATTTTTTACAGAGTTATAATCCTAGAATTCAGCGAGCGGATGGAACGTATGCGTTGGTTCTTGTTCCAACGCGCGAGCTATGTTTGCAGGTTCACGAGATTCTACAGAAGTTGTTGCATCGTTTTCATTGGATTGTTCCTGGATATGTCATGGGTGGTGAAAGCAGATCCAAAGAGAAAGCTAGGCTACGCAAAGGCATATCAATACTTGTAGCAACTCCTGGACGTCTGTTAGATCACTTGAAGAATACATCATCATTTTTGTACACAAATTTACGCTGGATAATCTTTGATGAAGCAGACAGAATCTTGGAATTAGGGTTTGGAAAAGATATAGAAGAAATACTTGATCTTTTGGGTTCTAGGAAAAAGGGATCTCCTGGAAATACAGATGCAGTAGCTAGTCATTCTAAAAATCAAAGGCAGAATTTGCTCTTATCAGCTACATTAAATGAAAAGGTGAACCATCTTGCTAGGATGAGTCTAGAGAATCCTGTGATGATTGGTCTGGATGGAGACAAGATTCAACCAATTGGATCAATTGAGAATTCTGATGGTTTGCGATCTGATGTGGATTATGATTCAGATTGCCCTTTGAAAATATTAGGCTCTTCTATTGGTGATTACAAAGTCCCAGTTCAATTAGTTCAGCGATATGTGAAAGTACCTTGTGGTGCACGGCTTGTTGTGCTTCTTTCCGTTTTAAAGCATCTTTTTGAAAGAGATGCTTCTCAAAAGGTTGTGGTGTTCTTTTCAACATGTGATGCAGTAGATTTTCACTATTTACTGTTGAGTGAATTTCAATTCTCATCACATCCTCAATCAGAAGAGCAAAGTAGGGAGAAGTTCCTCAGATGCAAAACTTTGCGATTGCATGGGAATATGGAGCAAGAAAATAGGAGAATCACATTTCAGGCTTTTCAGACAGAAAAATCAGCTCTTCTTTTATGCACTGATGTTGCTGCCCGAGGATTGGATTTTCCTAAAGTTAGATGCATTATACAGTATGATTCTCCTGGGGAAGCCACAGAATACGTGCATAGAGTGGGGAGAACTGCTCGTCTAGGCGAAAGGGGAGAATCATTATTATTTCTACAACCAATTGAAATAGATTATCTTGAACATTTGAAGAAACACGGTGTGTCACTGGCAGAGTATCCTCTCATCAAAGTGTTAGATAGCTTCCATGGCCAAAAGAAGGACATAAAAAGTTTTGTCTCAGTAGAGACACATTCTTGGGTGCAATGTCTTCAAAGGGCGCTTGAATCCTTTATCATGAGTAAGAACAAAATAATCACCCTGGCAAAGAAGGCATTTTGCTCTTGGATTCGTGCTTACACTGCTCATCGGGGTGAGCTGAAGCGAATTTTTATGGTTAAGAAACTTCACTTAGGGCATGTTGCTAAAAGCTTTGCACTGAAACAACAACCATCCTTGGTTGGAAAATCACTGCAAAACCAAAACAGGAAGAGGAAGAAAGAAGGAAAGCAAAAGGGGTTATCAAAAAAGAGGAAGGTCACAAGTGGTACGTAA 1842 0.411 MTEVTAMATRKSGISTGKGAKNSNEENITVKNHNEESHVFASCSFSSLGLHPTLCDQLRERMGFEVPTIVQAQAIPVVISGRHLLVNAATGTGKTVAYLAPIIHFLQSYNPRIQRADGTYALVLVPTRELCLQVHEILQKLLHRFHWIVPGYVMGGESRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKDIEEILDLLGSRKKGSPGNTDAVASHSKNQRQNLLLSATLNEKVNHLARMSLENPVMIGLDGDKIQPIGSIENSDGLRSDVDYDSDCPLKILGSSIGDYKVPVQLVQRYVKVPCGARLVVLLSVLKHLFERDASQKVVVFFSTCDAVDFHYLLLSEFQFSSHPQSEEQSREKFLRCKTLRLHGNMEQENRRITFQAFQTEKSALLLCTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPIEIDYLEHLKKHGVSLAEYPLIKVLDSFHGQKKDIKSFVSVETHSWVQCLQRALESFIMSKNKIITLAKKAFCSWIRAYTAHRGELKRIFMVKKLHLGHVAKSFALKQQPSLVGKSLQNQNRKRKKEGKQKGLSKKRKVTSGT* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01421 613 MobiDBLite consensus disorder prediction 592 613 - -
Pte11g01421 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 506 IPR001650 -
Pte11g01421 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 75 271 IPR014001 -
Pte11g01421 613 Gene3D - 329 606 IPR027417 -
Pte11g01421 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 271 IPR027417 -
Pte11g01421 613 PANTHER RNA HELICASE 31 588 - -
Pte11g01421 613 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 199 207 IPR000629 -
Pte11g01421 613 SMART helicmild6 381 459 IPR001650 -
Pte11g01421 613 Pfam Helicase conserved C-terminal domain 337 459 IPR001650 -
Pte11g01421 613 Pfam Domain of unknown function (DUF4217) 521 581 IPR025313 -
Pte11g01421 613 Pfam DEAD/DEAH box helicase 70 259 IPR011545 GO:0003676|GO:0005524
Pte11g01421 613 Gene3D - 7 274 IPR027417 -
Pte11g01421 613 MobiDBLite consensus disorder prediction 582 613 - -
Pte11g01421 613 SMART ultradead3 63 287 IPR014001 -
Pte11g01421 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 491 IPR027417 -
Pte11g01421 613 CDD SF2_C_DEAD 318 468 - -
Pte11g01421 613 MobiDBLite consensus disorder prediction 1 25 - -
Pte11g01421 613 CDD DEADc_DDX31 54 272 - -
Pte11g01421 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 43 72 IPR014014 GO:0003724
Pte11g01421 613 SMART DUF4217_3 519 584 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01421 Pte-Chr11 32712633 32720277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01421 44 490 Eukaryotic Initiation Factors Gene Family AT1G72730 25.223 4.48e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01421 K14806 - gmx:100805157 878.626