Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01404 ATGATGTTTCATGCTCTAGGGCCTCCGAGGCATTGTAGTGTAGTTGCTGTATTTTGCAGTAAAACACGTGATAATAAGCAGAAGCAGGATGACTCTGGTGGTCTACCAACATACCCTTTTCCCGAGCTTGTTTCATCTGGCCGACTTGAGGTCCAGGTTCTGATTAAACCTACTGATGGTGAGCTGAGGCGAGTTCTTGATTCTTCAGACCCAAGTTTAGTTTATCTGCAGGGACGCGAGTCAGAGGATACTGAAGAGATTGGACCTCTTTCATGGGATGATTTTGACTTGTCCGACCCTGAGGTCTTATGTGGAGCTTTTGGGTCCAAATTGCCTAATACTGTTTATTTGGAGATACCTAAAGGTGAAAAATTGGCTGAGGCGCTCCACTCAAAGGGAGTCCCTTATGTTATATACTGGAAAAATGTATTTTCAAAGTACGCTGCTGCTCATTTTCGTCAGGCACTTTTCTCAGTTGTCCAAAGTTCATACAGCCACACATGGGATGCATTTCAGCTTGCTCATGCTTCGTTTAGGTTATACTGCATACGGAACAACAATGTCCTTCCTTCTAATATCCAGAAAGTTAGCAATAAGCACGGACCACGATTGCTTGGAGATCCTCCCAAGATTGATGTCGTAGTGCCTGAGGTAGAGTTGCAGAATGAGGAAAGCTCTACTGAATCATTGCCTGCTATAAAAATCTATGATGATGATGTAACTTTGAGATTTCTTGTCTGTGGAGTTCCATGCATATTGGATGCGTGCTTATTGGGATCTTTGGAGGATGGGCTCAATGCTCTCTTAAGCACTGAAGTAAGTTCATTATTTCACTTCTCTAGTTCATCTGCTCCTCCACCCCCACTTCAGGCAGGCGCATTTTCTCGTGGAGTGTTGACGATGAGATGTGATATATCCACCTCTAGTTCTGCTCACATATCACTTCTCATATCTGGCAGTGCAGACACATGTTTCAATGATCACATTCTGGAGAATCATATTAAAAAGGAGCTCATTGAGAACAGTCAGCTGGTCCATGCGTCGCCTCATTGTGATCAAAGCAACAGTACATCTGAGCCTTGGAAGTCTTCCTCAATAGCCTGCGGAGCAAGTGTATTTGAAGTTTGCATGCAAGTTCCTTCTTGGGCTTCACAGGTTTTGAGACAGTTGGCACCAGCCGTTTTATATCGCAGCCTAGTGGCACTTGGAGTTGCCAGCATCCAAGGATTGGCTGTTGCATCTTTTGATAAAGATGATGCTGAACGCCTTCTTTTCTTTTGCACAAATCAACGCAAGGAAGTCCAAAAGTACAATGTTATTTTCACTGGGACTCCTAGTTGGTTGGTGGCTCCTCCTCCTAGTCGTAAAAGACCTGAACCATGTCAAAAAACCAGACCTGCCTATGGGAAATCCTCAATAGCTGAAGATAATGGTAACACCAGATCAAAATTTAATGTTGCTGCCATGAGGCCTATTCCTCATGCCCACCGTCAAAAGATGTTACCCTTTTCTGGATTTCCTGAGGCTCACAGACATGAAGGAGATCAGGGAAAAGTTAATTTGCCTCTTGTTCCCTCAAAGAATACTACAGGCACTGCTTCAGTTACACATAAGAAGTCTGTATCAAATGCACTTCTGGCACAGCAGGTTATTTCTTTAAATCCACTACCGCTAAAGAAACATGGTTGTGAGAGAGCCCCAATACAAGTTTGTTCAGAGGAGGAGTTTTTGAGAGATGTAATGCAGTTTCTAGTACATCGTGGACATACTCGGCTCATTCCCCAAGGTGGGCTTGCTGAGTTTCCTGAGGCCATTCTGAATGCTAAGCGCCTTGACCTGTTCAACTTGTATAAAGAGGTTGTATCAAGAGGAGGCTTTCATGTTGGTAATGGCATCAATTGGAAAGGACAAGTTTTTGCCAAGATGCGGAATCACACATTAACAAATAGAATGACAGGTGTGGGTAATACACTCAAGAGACATTACGAGACTTACCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAGTGCTGCTTGTTATGCCACAGTAGTGCAGCAGGTGATTGGGTGAATTGTGGAATATGTGGTGAGTGGGCTCACTTTGGCTGTGATAGGCGGCAGGGACTTGGTGCCTTCAAGGACTATGCTAAAACTGATGGGCTGGAGTACATTTGTCCTCATTGCAGTGTTTCAACTTTCAAGAAGAAAACCCCGAAAACTGCAAATGGTTACTAA 2244 0.4372 MMFHALGPPRHCSVVAVFCSKTRDNKQKQDDSGGLPTYPFPELVSSGRLEVQVLIKPTDGELRRVLDSSDPSLVYLQGRESEDTEEIGPLSWDDFDLSDPEVLCGAFGSKLPNTVYLEIPKGEKLAEALHSKGVPYVIYWKNVFSKYAAAHFRQALFSVVQSSYSHTWDAFQLAHASFRLYCIRNNNVLPSNIQKVSNKHGPRLLGDPPKIDVVVPEVELQNEESSTESLPAIKIYDDDVTLRFLVCGVPCILDACLLGSLEDGLNALLSTEVSSLFHFSSSSAPPPPLQAGAFSRGVLTMRCDISTSSSAHISLLISGSADTCFNDHILENHIKKELIENSQLVHASPHCDQSNSTSEPWKSSSIACGASVFEVCMQVPSWASQVLRQLAPAVLYRSLVALGVASIQGLAVASFDKDDAERLLFFCTNQRKEVQKYNVIFTGTPSWLVAPPPSRKRPEPCQKTRPAYGKSSIAEDNGNTRSKFNVAAMRPIPHAHRQKMLPFSGFPEAHRHEGDQGKVNLPLVPSKNTTGTASVTHKKSVSNALLAQQVISLNPLPLKKHGCERAPIQVCSEEEFLRDVMQFLVHRGHTRLIPQGGLAEFPEAILNAKRLDLFNLYKEVVSRGGFHVGNGINWKGQVFAKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVSTFKKKTPKTANGY* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01404 747 SMART ARID_2 567 670 - -
Pte11g01404 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 736 IPR013083 -
Pte11g01404 747 ProSiteProfiles ARID domain profile. 570 674 IPR001606 GO:0003677
Pte11g01404 747 Gene3D - 567 673 IPR036431 GO:0003677
Pte11g01404 747 MobiDBLite consensus disorder prediction 451 475 - -
Pte11g01404 747 Pfam ARID/BRIGHT DNA binding domain 573 670 IPR001606 GO:0003677
Pte11g01404 747 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 9 747 IPR042293 -
Pte11g01404 747 CDD PHD_ARID4_like 680 731 - -
Pte11g01404 747 CDD ARID 572 670 - -
Pte11g01404 747 SUPERFAMILY FYVE/PHD zinc finger 666 734 IPR011011 -
Pte11g01404 747 SUPERFAMILY ARID-like 571 685 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01404 Pte-Chr11 32499896 32508145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01404 2 746 ARID Transcription Factor Family AT3G43240 64.486 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte11g01404 ARID 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01404 - - rcu:8259036 1135.94