Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01381 ATGGAGGCTAGAATTGGAGGTAAGGGTCACCATGATTATGGACATGTGGTATCAGAAATGAAGTCTCTCAGGAAAAAGAGTGCGGAATGGGATTTGAATGATTGGAAATGGGACGGCCATCTTTTTACAGCTAGTCCACTTAATTCTACTCCATCTGACTGTAAAAGTAAGCAGTTATTTCCACTGGAGCCTGAAATGCGGGCAAGTGCTAATTTATCTAACAGTTCAACTTCTGGTTCGGATGACATCAATCAAGGAAGGAGGGAATTGGAGAAGAGGAGAAGGGATTTGAGTGCTGAATATGAAGAAATAAATGATGAAGCTCGCTCTCTTGGTTTAAATCTCGGTGATCAAAGTTATCCTGTTGATGGAGTTGAAAAGACTGGAAAGAAGACCAAGGTCGTTGGTACTAATTCAAGCCGCGCTGTTTGTCAGGTGGAAGATTGTAATGCTGATCTTAGTAATGCAAAGGAATATCACAGGCGTCACAAGGTTTGCGATTTGCATTCCAAAGCGACTAAGGCACTTGTGGGAAATGTTATGCAAAGGTTCTGTCAGCAGTGCAGCAGGTTTCATGTACTTCAAGAGTTTGATGAGGGAAAGAGGAGTTGTCGTAGGCGGCTAGCAGGGCATAATAGGAGAAGGAGAAAAACACATCCTGATCCTGCAATTAGTGAAGGTTCTGTGAATAATGAAAGGAGTAGCAGCTACCTTTTGATAAGTCTATTACGAATTCTGTCCAACATGCACTCAAACAGCTCAGGATCAGATCAAGCTAAGGACCAGAGTCTTCTCTCTCATCTTTTAAGCAATCTTGCAAACCTTGCTGGTCCAGTCGATGGCAGTAATGTAGCTGAATTGTTGGAGAGATCTCAAGGGTTGCTAAATGGTGGGACATCTAACAATGCTGCAGCAAAGAAGCTTGACGAGAGTCCTCATGGTCCTGTTCCCACTAAGCCTTCTGATTCAGCTACTAAGATGGGTGTAAATTGCACTAGTCCAGATCCTCTGAATTCTGAAGGGCAAAGAGCGCTTGCACCTCTTCATGTTACAGCTGAAACATGTGTGACTTCAGGTGATGCTGAGGTAGGAAGTAAAAGGTCCATGTCAGTTCTGCAGTCCGCTAATGTACCTTTGTCAAGGGGCAACCTTCCAAACCAATCAGTTGCAGCCCCAACTACATTCGGAAGAACTAATGTGAATAGCATCGACTTGAATTGTGTGTATGATGATACTCAGGATGTGGTTAAGTCCAATGCATCTACTGCTTTGGGGATTGGATCTCTTAGACATCCTTGCTGGTTGCAATCTGACTTTCAAAAATCAAGCCCACCGCAAACTAGTCGAAATTCTGGCTCAACTTCTACCCGCTCACCATCCAGTTCTAGTGGAGATGCTCAGTGTCGCACAGATCGAATTGTTTTCAAACTCTTTGGGAAGGATCCAAAGGACTTTCCATATACTCTCAGATCACAGATCCTTAATTGGCTGTCCAACAGTCCAACAGATATTGAGAGTTATATCAGGCCAGGCTGCATAATTCTGACCGTGTATATCCGTTTGGAGAAATCTGCATGGGAGAAGCTCAGCAGTGATCTAGGATGGAGCCTACAAAAACTTCTTAATGCATCAAATGATCCATTCTGGAGGATGGGCTGGATGTATGCAAGGGTGCAGAACTACGTTGCTTTTGTATACAATGGTCAAGTTGTCTTGGATGTGCCTCTACCATTGAGGAGTTCACCATGCTGCAAGATATTGAGTGTTAAACCAATTGCTTTTCCTGCATCTAGAAGTACCCAATTTGTAGTAAAAGGGTATAACTTTACCCGATCAAGCACAAGGTTACTTTGTGCATTTGAAGGTAACTATTTGGTCCAGGAGAACTGTTATGACTTGGCAGACAGTGCCGATTCAGCTGCTGAGCACAATGAGCTTCAGTGCCTCAACTTTTCTTGTTCTATACCAGAAGTAACTGGGAGAGGATGCATTGAGGTAGAAGACCTTGGTCTGAGCAGCAGTTTCTTTCCATTTATAGTCACAGAACAAGAAATTTGCTCTGAAATCTGCATGCTGGAGAAAATAATTGAAGTGCCTGAGACTTTGTATGATGCTCAAAAAGAAAGTAAAGAAATGAGTGAAAGGACTCAAGCCCTTGAGTTTATACATGAAATGGGTTGGCTTCTTCGAAGAAACCATTTGAAGTTCAAATATGCATATTTGGGATCCACACAAGATCTCTTCCCTTTCAGCAGGCTTAAGTGGCTTCTTGAGTTCTCACTGGACCATGATTGGTGTGCAGTAGTAAAGAAACTCCTCAGTTTTGTGTTTGATGGTGGAGTTGATTCTGGAGATCACCCTTCCATTGAGATAGCATTGTTTGACATGTGTCTTCTGCACAAAGCTGTGAAGAGAAATTGTAGGCCCATGGTAGAACTCTTGTTACAGTTTGTCCCTGTCAGAAGTTCTGAGCAACCACACTGTGATGAGAATGAACTAGTTCGCTTGGGTGGTAACAAGTACATTTTTAAACCTGATGTTGCTGGGCCTGCAGGGTTGACTCCTCTTCATATTGCGGCAAGCAGCATAGGCTCTGGGAATGTATTGGATGCCTTGACCAGTGATCCTGGATCGGTTGGACTTGAAGCATGGAAGAATGCTCGTGACAATACAGGTTTGACTCCTAATGACTATGCATCCCTTCGAGGCCATCGGCAATATATTCAGCTTGTCCAGAGGAAACTAAGCAAGAAACCTGAAACTGGGCATGTTGTGGTTGACGTCTCCAGAAACACAGTAGGCTTCAATATCAAGCAGAAATCAATAGATGGTTATAAATCATCAAAAGTTGCGTGCTTTGAGACTGAGAAGATGGAAATGAAAGCAATATCACAACATTGTGAATCGTGCCGGCAAGAACTGGCCTATCCAACGACCATGAGAACTTCATTATTATACAGGCCAGTAATGCTCTCAATGGTAGCCATTGCTGCTGTCTGTGTTTGTGTGGCTTTGCTCTTCAAAAGCTCACCGAAAGTTCTTTATAAGCCTTTCTCATGGGAATCTTTGCAATACGGATCCATGTGA 3087 0.4318 MEARIGGKGHHDYGHVVSEMKSLRKKSAEWDLNDWKWDGHLFTASPLNSTPSDCKSKQLFPLEPEMRASANLSNSSTSGSDDINQGRRELEKRRRDLSAEYEEINDEARSLGLNLGDQSYPVDGVEKTGKKTKVVGTNSSRAVCQVEDCNADLSNAKEYHRRHKVCDLHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDPAISEGSVNNERSSSYLLISLLRILSNMHSNSSGSDQAKDQSLLSHLLSNLANLAGPVDGSNVAELLERSQGLLNGGTSNNAAAKKLDESPHGPVPTKPSDSATKMGVNCTSPDPLNSEGQRALAPLHVTAETCVTSGDAEVGSKRSMSVLQSANVPLSRGNLPNQSVAAPTTFGRTNVNSIDLNCVYDDTQDVVKSNASTALGIGSLRHPCWLQSDFQKSSPPQTSRNSGSTSTRSPSSSSGDAQCRTDRIVFKLFGKDPKDFPYTLRSQILNWLSNSPTDIESYIRPGCIILTVYIRLEKSAWEKLSSDLGWSLQKLLNASNDPFWRMGWMYARVQNYVAFVYNGQVVLDVPLPLRSSPCCKILSVKPIAFPASRSTQFVVKGYNFTRSSTRLLCAFEGNYLVQENCYDLADSADSAAEHNELQCLNFSCSIPEVTGRGCIEVEDLGLSSSFFPFIVTEQEICSEICMLEKIIEVPETLYDAQKESKEMSERTQALEFIHEMGWLLRRNHLKFKYAYLGSTQDLFPFSRLKWLLEFSLDHDWCAVVKKLLSFVFDGGVDSGDHPSIEIALFDMCLLHKAVKRNCRPMVELLLQFVPVRSSEQPHCDENELVRLGGNKYIFKPDVAGPAGLTPLHIAASSIGSGNVLDALTSDPGSVGLEAWKNARDNTGLTPNDYASLRGHRQYIQLVQRKLSKKPETGHVVVDVSRNTVGFNIKQKSIDGYKSSKVACFETEKMEMKAISQHCESCRQELAYPTTMRTSLLYRPVMLSMVAIAAVCVCVALLFKSSPKVLYKPFSWESLQYGSM* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01381 1028 Gene3D - 135 205 IPR036893 GO:0003677|GO:0005634
Pte11g01381 1028 Coils Coil 80 114 - -
Pte11g01381 1028 MobiDBLite consensus disorder prediction 296 326 - -
Pte11g01381 1028 MobiDBLite consensus disorder prediction 68 83 - -
Pte11g01381 1028 SUPERFAMILY SBT domain 142 222 IPR036893 GO:0003677|GO:0005634
Pte11g01381 1028 FunFam Squamosa promoter-binding-like protein 14 135 205 - -
Pte11g01381 1028 MobiDBLite consensus disorder prediction 67 94 - -
Pte11g01381 1028 Pfam SBP domain 144 217 IPR004333 GO:0003677
Pte11g01381 1028 MobiDBLite consensus disorder prediction 208 229 - -
Pte11g01381 1028 Gene3D - 753 932 IPR036770 -
Pte11g01381 1028 ProSiteProfiles Zinc finger SBP-type profile. 141 218 IPR004333 GO:0003677
Pte11g01381 1028 SUPERFAMILY Ankyrin repeat 765 910 IPR036770 -
Pte11g01381 1028 MobiDBLite consensus disorder prediction 439 466 - -
Pte11g01381 1028 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 77 910 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01381 Pte-Chr11 32294947 32301786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01381 1 285 SBP-box Gene Family AT3G60030 51.014 4.10e-70 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte11g01381 SBP 7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01381 - - jre:109001159 1240.71