Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01376 ATGCCCCTCCCTCCTTGTCCGATACTTGTTGGAAAAAGGAAAAAGACTGCAGCTGACAAGTCACTAACTTTATGGGATGTTATGAGTGGTGAGAGGATATCACCAACTGCCCTTCAGCAGACTTCTCTTCATGCTCGCCTCCATCTTGGTTACTCTTCCCCATCTTCTTGTCTGGCTTCCCCTTTCTCAAGTCCTCCGATGATTGTTCACTTGAACGAAGGAACCAACACTGTCCTCCCTGTGGCAGTTTCTGATACATACACCACGCTAGCCCCTCCACCGCGCAAAGTATCTGATGGCACCACTTCTTTTGTGCCAACTGCTGCATGTTTTGAAAACATGGTCAATTTTTGGCATTCTTTGATGGATATAGGAATTATTTTGATACACGGCTTACGGAGGTTTCTCCAGCTGTGCTGTAGTTTTGTGGATGAAAATAGAACCGTCGACATGTTTCCAGCGGGCATACGCGTTCTTGCTGTAGATGACGACCCTATTTGTCTCAAACTGCTGGACAATCTGCTCCGAAAATTACAGTATCATGTTACGATAACTAGTCAGGCAATCAAGGCACTGCAGATGTTGAGGGAGAATAGAAACAGATTTGACCTCGTTATTACCGATGTCAATATGCCTGACATGGATGGATTTAAATTTCTTGAGCAAGTGGGAATTGAGATGAACCTACCAGTCATTATATTGGTGGCACACAGTGATACAAACCTTGTAATGAAGGGCCTTACACATGGAGCGGTTGACTATTTGTTAAAACCTGTTAGGATCGAACAGCTCAAGAACATCTGGCAATATGTAATTCGGACTCAGAGAGAGAAAATTGATTCTAGCAACCAGAATAAGGCTCCCTCTCGAGAAGTCTCATCGGTCATCATAATAGCAAACAACGCTGATCAGAATTGGGAAAGCAGTAAAAAATTGAAAGACCAAAATGAGGATGAGGATGAAGATCCAGAAGAGAGTGGTCCTGAAAGCGACGATCCTTTAACCCAAAAGAAGCCTCGAGTAGTCTGGTCTGTTGAGCTCCACAGAAAGTTTGTTGATTCTGTTAAACAGTTGGGTTTTGAAAAGGCTGTCCCAAAGAAAATTCTTGATCTAATGAAAGTTGAAGGACTCACAAGGGAAAACGTTGCAAGCCATCTACAGAAATACAGGCTCTATCTCCAACGAATCCACACTGAAAAAAAAAACGATATGCACATATGCTTGCTGCACTAG 1233 0.4323 MPLPPCPILVGKRKKTAADKSLTLWDVMSGERISPTALQQTSLHARLHLGYSSPSSCLASPFSSPPMIVHLNEGTNTVLPVAVSDTYTTLAPPPRKVSDGTTSFVPTAACFENMVNFWHSLMDIGIILIHGLRRFLQLCCSFVDENRTVDMFPAGIRVLAVDDDPICLKLLDNLLRKLQYHVTITSQAIKALQMLRENRNRFDLVITDVNMPDMDGFKFLEQVGIEMNLPVIILVAHSDTNLVMKGLTHGAVDYLLKPVRIEQLKNIWQYVIRTQREKIDSSNQNKAPSREVSSVIIIANNADQNWESSKKLKDQNEDEDEDPEESGPESDDPLTQKKPRVVWSVELHRKFVDSVKQLGFEKAVPKKILDLMKVEGLTRENVASHLQKYRLYLQRIHTEKKNDMHICLLH* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01376 410 PANTHER TWO-COMPONENT RESPONSE REGULATOR 157 384 IPR045279 GO:0009736
Pte11g01376 410 Pfam Myb-like DNA-binding domain 340 390 IPR001005 -
Pte11g01376 410 NCBIfam myb-like DNA-binding domain, SHAQKYF class 338 391 IPR006447 GO:0003677
Pte11g01376 410 SUPERFAMILY CheY-like 155 298 IPR011006 -
Pte11g01376 410 ProSiteProfiles Response regulatory domain profile. 157 272 IPR001789 GO:0000160
Pte11g01376 410 MobiDBLite consensus disorder prediction 307 337 - -
Pte11g01376 410 CDD REC_typeB_ARR-like 158 272 - -
Pte11g01376 410 Gene3D - 155 291 - -
Pte11g01376 410 SMART REC_2 156 268 IPR001789 GO:0000160
Pte11g01376 410 Gene3D - 334 397 - -
Pte11g01376 410 SUPERFAMILY Homeodomain-like 335 395 IPR009057 -
Pte11g01376 410 Pfam Response regulator receiver domain 158 266 IPR001789 GO:0000160
Pte11g01376 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 335 394 IPR017930 -
Pte11g01376 410 FunFam Two-component response regulator 334 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01376 Pte-Chr11 32249947 32252744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01376 143 396 Response Regulator Gene Family AT2G25180 60.784 5.73e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte11g01376 Response_reg 3.3e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01376 K14491 - qsu:112019876 333.954