Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01358 ATGGATGTAAATGGCAGAGGCTCCAGCTCAGCCACCATTGAAAGCGAGGATGAAATCATGGACCTTCGAAGAGGGCCCTGGACTGTGGATGAGGATGTCATCCTCATGAATTACATTGCCAATCATGGTGAAGGTCGATGGAATTCCCTTGCTCGCTCTGCTGGCCTCAAGAGAACAGGCAAAAGCTGCAGGCTGAGATGGCTGAACTATCTTCGTCCTGATGTTCGACGCGGAAACATCAGCCTTGAAGAACAACTCCTAATTCTTGAACTCCATTCTCGTTGGGGCAATCGATGGTCCAAAATAGCTCAATACTTGCCTGGGAGAACAGACAACGAGATAAAAAATTATTGGAGAACACGTGTTCAAAAGCACGCCAAGCAGCTCAAGTGTGACGTGAACAGCAAGCAATTTAAGGATACCATGCGTTACCTATGGATGCCAAGACTTGTAGAACGCATTCAAGCTGCCGCGGCCGCGGCCTCCAACTCTAATGCTGCGACGGCGAATAGCATGAGTACCACCGCTAGCAATTGCCATAATTTCAAAAACAGTTGCAATAACATTGAGCTTCCCAATGGAAACATGATCATTCCGACTCCAGCCGTGAACAATGGAGGTTCACATGTTACAACACAAAGCTACACACCGGAAAATAGTGCCACAGCTGCATCTTCAGACTCCTTTGCTGCTCAAGTGTCACCTATTTCAGACATAACTGAATATTACAGTGTTCCTGCTTTAGTTAATGGTAATAATCAAGATTATTGTTATCAAACTAGTCAGGCAAGCTACTCAGACTCTTTGACTAGTCCATATGGATTCTTCATGAGTCATGGATTAGATTTCCAAACCACGGATCAAATTCAACAAGAGAGTCCATGGTTTCAAGGTGGGGATGTCCCAGAAAATCTGTGGAATGTTGATGACTCGTTATTTTTACAGCAACAGCCATGGCAGCATCTGACCACACAGTGA 978 0.453 MDVNGRGSSSATIESEDEIMDLRRGPWTVDEDVILMNYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNISLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAAASNSNAATANSMSTTASNCHNFKNSCNNIELPNGNMIIPTPAVNNGGSHVTTQSYTPENSATAASSDSFAAQVSPISDITEYYSVPALVNGNNQDYCYQTSQASYSDSLTSPYGFFMSHGLDFQTTDQIQQESPWFQGGDVPENLWNVDDSLFLQQQPWQHLTTQ* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01358 325 CDD SANT 97 120 IPR001005 -
Pte11g01358 325 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Pte11g01358 325 FunFam Myb transcription factor 24 76 - -
Pte11g01358 325 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Pte11g01358 325 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Pte11g01358 325 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Pte11g01358 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Pte11g01358 325 CDD SANT 26 71 IPR001005 -
Pte11g01358 325 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 240 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pte11g01358 325 Gene3D - 21 77 - -
Pte11g01358 325 FunFam MYB transcription factor 81 144 - -
Pte11g01358 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Pte11g01358 325 SMART sant 23 73 IPR001005 -
Pte11g01358 325 SMART sant 76 124 IPR001005 -
Pte11g01358 325 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Pte11g01358 325 Gene3D - 80 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01358 Pte-Chr11 31942437 31944852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01358 1 311 MYB Transcription Factor Family AT3G06490 53.416 6.08e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte11g01358 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01358 K09422 - qsa:O6P43_003712 412.535