Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01296 ATGTCAGGAGAAGAAGCAGAAGTCCAAGTTGAGGCTGCACCTGCACCTGCACCTGCAGCAGTGGTAGAAGATCTGGACATCGAGAAAGCATTGGAGCTTGTGCTAAGGAAATCAAATGCATATGGTGGCCTAGCAAGAGGACTCCATGAGGGTGCCAAGGCTATTGAAAAGCGTACTGCTTTTCTTTGTGTTCTAGCAGAGGACTGTGATGAGCAAAATTATGTTAAGTTGGTGAAGGCACTTTGTGCTGAGCACAATATTGATCTGTTTACAGTTCCAAGTGCTAAGACCCTTGGCGAGTGGGCTGGTTTGTGTAAGATTGACTCTGAAGGGAAGGCCAGAAAGGTGGTTGGTTGCTCCTGTGTTGTAGTTAAGGACATTGGGGAGCAGACTCCAGCTTCTGATTTTATCAAGAATAGGAAGTCTCAGTAG 432 0.4653 MSGEEAEVQVEAAPAPAPAAVVEDLDIEKALELVLRKSNAYGGLARGLHEGAKAIEKRTAFLCVLAEDCDEQNYVKLVKALCAEHNIDLFTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDIGEQTPASDFIKNRKSQ* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01296 143 FunFam 40S ribosomal protein S12 7 143 - -
Pte11g01296 143 SUPERFAMILY L30e-like 26 140 IPR029064 -
Pte11g01296 143 PANTHER 40S RIBOSOMAL PROTEIN S12 14 140 - -
Pte11g01296 143 Gene3D - 7 143 IPR029064 -
Pte11g01296 143 ProSitePatterns Ribosomal protein S12e signature. 30 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte11g01296 143 PRINTS Ribosomal protein S12E family signature 34 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte11g01296 143 PRINTS Ribosomal protein S12E family signature 89 110 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte11g01296 143 PRINTS Ribosomal protein S12E family signature 48 64 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte11g01296 143 PRINTS Ribosomal protein S12E family signature 114 127 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte11g01296 143 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 30 123 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01296 Pte-Chr11 31297976 31300345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01296 1 138 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 66.667 3.89e-61 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01296 K02951 - jre:109012893 188.348