Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01280 ATGCTGGACGGAAAAGTCTCGCCCATGGTCGAATTTAGTACCTCCGATTCTCTCTCGGTTGCTGGTGATGATGATCACACGAAGCTCGTCTCGGAAGAGGTGAAAACGGACAAGGATCCTAGAAGGATTGCCAGAAAGTATCAACTGGAGTTATGCGAGAAAGCTTTGCAAGAAAATGTAATTGTTTGGTTGGGGACAGGCTGCGGTAAGACACACATTGCTGTGCTGCTTATGTACGAGATGGGTCACTTGATAAGGAAGCCTAAGAAGAACATATGTGTTTTTCTTGCTCCTACAGTTGCTCTAGCTCAGCAGCAAGCAAAGGTTATTGAAGACTCACTTGACTTTAAAGTTCGTTGTTATTGTGGGAGCTCCAAGAGTTTGAAAAGCCGTCAAGATTGGGGCAATGAGCTTAATGAATATGAGGTTTTGGTTATGACCCCTAAGACATTATTTCACAGCTTATCTCACTGCTACATCAAGATGGACTCAATTGAGCTTTTGATATTTGATGAATGCCACCATGCCCAAGTCAACAGCAACCATCCTTATGCCGAAATCATGAAAGTTTTCTATAAACCCAATGGTGGAAAGCTCCCCCGTATATTTGGCATGACTGCATCTCCAGTTGTAGGAAAAGGTGCTTCTAATCCAGCAAACCTTGCCAAAACCATCAATAGTCTTGAACATATACTTGATGCTAAGGTTTATTCAGTTGAAAGCAAAGAAGATTTGGATAGAGTTGTGGCATCTCCTGTACTTGTGATGTATGATTACGGGACCAATGTGCGTGGAAGTGGAGCACATGCCAGTTATATTTCATGTTGCAGCAAACTGGTGGATATAAAACGTCAGTGTATTACCATCCTTAGCAAGAAAGAAGTGCATCTTCAGCATCAACGGAACACTAAGAAACTCCTTAGTCGGATGCATGACAATTTGATGTTTTGCTTGGAGAATCTTGGCATTTGGGGAGCATTGCAGGCATGCCATGTTCTTGGTGATCACTCGGAGAGGGACGAATTGGTGGAGGTTGAGAAAAGTGGGAGAGATGATTCTTTGTGTGATAATTATCTTGCTCAGGTGGCTGCACTTTTATCTTCTGCTTGTGGTGAAGGTGGCAATGAAACTGATCCCTTCTCTGTAGACTTCTTGAGGGAACCCTTCTTCTCACGAAAGCTTTTACGCCTCACTGGAATCCTTTCCTCTTTTAGATTAGAACCAACTACAAAATGTATTATATTTGTCAATAGAATTGTTACTGCTAGATGCTTATCATGCATCCTACAAAAGCTTAAGATCCTGGCATCATGGAAGAGTGGTTTCCTTGTAGGAATCCACTCTGGACTCAAGAGTATGTCGCGGAAGACCACAAAAGCTGTTCTTGATAAGTTCCGTTCTGGAGAGTTGAATTTACTAGTTGCAACTAAAGTTGGTGAGGAAGGACTCGACATTCAGACATGTTCACTTGTCATTAGGTTTGATCTTCCAGAAACAGTTGCCAGCTTTATACAGTCAAGGGGTCGTGCACGTATGCCTCAGTCTCAATATGCTTTTCTGGTGAACAGTGCCAACACCAAGGATCTGAACTTAATCGAAAGTTTCAAGAGGAATGAAGAGCAAATTAATTTTGAAGTTGCTTTCCGGACATCTGACGAAGTATTTATAAGTTCTCAAGAAAGAGTATACAAGGTTGATTCATCTGGTGCTACTATCAGTTCCAGTTATAGCATTGCCTTGCTTCACCACTACTGTGCGAAGCTTCGTCATGACGAGTATTTTGACCCCAAACCCATGTTTTTCTACTTCGATGATTTAGGGGGAACAGTCTGCCGCATTACTTTTCCAGGTAATGCTCCGATACATCAAATTGTAAGTGACCCTCAATCTTCAATGGAGGCTGCCAAAAAAGATGCTTGTCTGAAAGCAATTGAGGAATTGCATAAAATTAGTGCCTTGAATGATTTTCTATTGCCGGGGAAAAGAGAGACAAACAAACAGGAAGTACTAGTTGGTTCTGATATTGAAGAGGCCAGTCATCGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCCTTCGACATGCTTGGACCGAGAATGATGGTCCTCTTTTTCTTCACTCTTACTTCATAGAATTTAAACCTCACCCAAAGGATAGGGACTATAAGCAGTTTGGTTTTTTTATCAAGACACAGCTCCCATTCGAGGCTGAAAGAATGGAGCTTGACCTTCATTTGGCTCGTGGCAGATCAGTGATTACCAAATTTGTACTACTTGGGCTTGCAGAATTTGATGCAGATCAGATTAGAATGGCTCAAGATTTTCAGGAAATGTCACTAAAGCTTATCCTTGACAGATCAGAATTTATTCCTGAATTTGTAACTTTGGGGAAAAATCACTCTTTTCAGTCGATATTATCAACCTTCTATTTGTTGCTTCCTGTTCTTCTGCATGAACATCAAAAGAAGATGATGGTAGATTGGGAGACAGTGACAAGATGTCTATCTTCACCTGTGTTCAGGCATCCAGCTGATGTACATGAGATTCCTGTTTCCAATGGGTACATCCAACTTGCCAATGGTCAACGAAGTATGAGAGATGTGGAAAATAGTTTGATGTATGCCCCACATAAGAAGGCATTTTACCTTATTACTAATGTGGTACACGAGAAGAATGGTCTTAGTCCTTTAAAAGATTCTGCTGCTTTCACCCACGTAGACCACTTCAGAGAAAGGTTCTCCATCGATCTTAAGTATCCCGATCAACCTTTGTTACGTGCTAAACCGCTCTTCTCTATCCACAACTTACTACACAACCGAAAGTCAGAGGATAGAGAATCACAAGAGCTTGAGGAGTATTTCATTTATTTGCCTCCTGAGCTTTGTGAATTGAAGATAATTGGCTTTTCAAAAGATATTGCCAGTTCATTATCTTTGTTACCATCAGTCATGCATCGTCTAGAAAACTTGCTGGTGGCAATTGAACTCAAGCAGAGGCTATCTTCTTCATTTCCAGAGGGAGATCAAGTTTCTGCCTACAGGATTCTAGAAGCTCTCACTACAGAGAAGTGCCAGGAGCGCCTTTCTCTTGAAAGGCTTGAAATACTTGGTGATGCTTTTCTGAAATATGCAGTTGCACGACGTTTGTTTCTTAAGCATGATTGCCTTGATGAAGGAGGATTGACAGAAAAGCGTTCTGAGGTTGTAAACAATTCCAATTTGTGCAAGCTTGCAATTAGCCGCAATTTGCAGGTCTATATACGTGACCAGGCATTTGAGCCCAGCGAGTTCTTTCCTCTCGGCCGTCCTTGTTTAAGATATTGTAGCGAAGAAACACAGGCTACCACTCATTCTCAAATTTCAAACTCTGATACAGATCACGGGAAATCAACTGAAGCTCGATGTAGTAAAAATCATCACTGGTTGCATAAGAAAACAATTGCGGATGTAGTTGAAGCTCTTGTAGGTGCATTTTTAGTGGACAGTGGTTTTAAAGCTGCAACTGCATTTCTCAGATGGATTGGCGTAAAACTGGAATTTGAAACTTTAGAACTGGTCAATGCATGTAGAGCAAGTATTAGCTACATTCCACTTTCTTCTCTTGTGGATGTTCCCTTGTTGGAAGATAATTTAGGATATTGGTTTTTGCATCAAGGTCTGCTTCTACAGGCTCTAGTACACCCTTCTTACAGCGATCATGGTGGAGGCTGCTATCAGAGACTGGAGTTCCTTGGAGATGCTGTCTTGGATTATTTAATTACATCGTATTTGTACTCAGTTTATCCAAAGTTAAAGCCTGGACAACTGACAGATTTGAGATCAATGTTCGTGAACAATAAAGTATTTGCTAATGTTGCGGCGGATCGGTCCTTCCATAGATTTCTTATATGCGATTCGAGTAGTCTGTCAGATTCAGTAAAAGAGTATGTGGACTTCTTTAAATCTCCTGAATTTCATAGTGGTTCTTCTGAGGGGCCAAAATGTCCAAAGGCACTTGGTGACATTGTCGAATCTTGTATTGGTGCCGTTCTCCTCGACTCGGGCTTCAATTTGAAGAGCATTTGGAATATCATGTTGTCTTTTTTGGAGCCAATCATTAATTGCCCATGGTTGGAGCTTAGTCCCACGAGGGAGCTGCAAGAGCTTTGCCAATTTTGTAATTTGTATTTAGAATTTCAGACATCAAAAAATGAGGGTCTGTTCTTGGTTGAAGCCAAAGCCAGCAATAATGATGTGTGTGTGACTGCTTCTACTACCAACATCAGCAAAAAAGATGCTGTTATAATTACTTCTAGAATACTATGTGCAAAATTGAAGGCCAAAGGATGTGTGCTGAAGTCCAAATCTTTGAAGGAAGTAATAAAGTCGAGCCCCAAAATGGAAGCTAAACTGATTGGCTATGATGAAACTCCCATAAATGTTACCCCCCATGCAGTGACTGGAAATAAAAAGAATGTGCAGAGCAGCTTTTACCCCGATTCAAGTATTGTACCTGTTAGCAGACAGGCTTGTTCTTCAACTCTTACCTCAAAAAATACCAATTCTTCTGGGAGTTCTGGTGGATCTTGCACAGGAACTGCAAGATCACTATTATATCAAATCTGTGCTACTAATTGCTGGAAGCCCCCTTCTTTTGAATGTTGTAAAGAGGAAGGACCAGGCCACTTAAAGCTATTTACTTACAGGGTCATAGTGAAGATCGATGATGCTCCAGATCTGATTTTAGAGAGCTTTGGAGTAGCTCAGGCGAAGAAACGAGATGCAGCGGAGAATGCAGCTGAAGGTGCATTATGGTACCTGAAGCAAGAAGGGTATCTTGTCAAGAATCATTGA 4833 0.4132 MLDGKVSPMVEFSTSDSLSVAGDDDHTKLVSEEVKTDKDPRRIARKYQLELCEKALQENVIVWLGTGCGKTHIAVLLMYEMGHLIRKPKKNICVFLAPTVALAQQQAKVIEDSLDFKVRCYCGSSKSLKSRQDWGNELNEYEVLVMTPKTLFHSLSHCYIKMDSIELLIFDECHHAQVNSNHPYAEIMKVFYKPNGGKLPRIFGMTASPVVGKGASNPANLAKTINSLEHILDAKVYSVESKEDLDRVVASPVLVMYDYGTNVRGSGAHASYISCCSKLVDIKRQCITILSKKEVHLQHQRNTKKLLSRMHDNLMFCLENLGIWGALQACHVLGDHSERDELVEVEKSGRDDSLCDNYLAQVAALLSSACGEGGNETDPFSVDFLREPFFSRKLLRLTGILSSFRLEPTTKCIIFVNRIVTARCLSCILQKLKILASWKSGFLVGIHSGLKSMSRKTTKAVLDKFRSGELNLLVATKVGEEGLDIQTCSLVIRFDLPETVASFIQSRGRARMPQSQYAFLVNSANTKDLNLIESFKRNEEQINFEVAFRTSDEVFISSQERVYKVDSSGATISSSYSIALLHHYCAKLRHDEYFDPKPMFFYFDDLGGTVCRITFPGNAPIHQIVSDPQSSMEAAKKDACLKAIEELHKISALNDFLLPGKRETNKQEVLVGSDIEEASHRGELHEMLVPSALRHAWTENDGPLFLHSYFIEFKPHPKDRDYKQFGFFIKTQLPFEAERMELDLHLARGRSVITKFVLLGLAEFDADQIRMAQDFQEMSLKLILDRSEFIPEFVTLGKNHSFQSILSTFYLLLPVLLHEHQKKMMVDWETVTRCLSSPVFRHPADVHEIPVSNGYIQLANGQRSMRDVENSLMYAPHKKAFYLITNVVHEKNGLSPLKDSAAFTHVDHFRERFSIDLKYPDQPLLRAKPLFSIHNLLHNRKSEDRESQELEEYFIYLPPELCELKIIGFSKDIASSLSLLPSVMHRLENLLVAIELKQRLSSSFPEGDQVSAYRILEALTTEKCQERLSLERLEILGDAFLKYAVARRLFLKHDCLDEGGLTEKRSEVVNNSNLCKLAISRNLQVYIRDQAFEPSEFFPLGRPCLRYCSEETQATTHSQISNSDTDHGKSTEARCSKNHHWLHKKTIADVVEALVGAFLVDSGFKAATAFLRWIGVKLEFETLELVNACRASISYIPLSSLVDVPLLEDNLGYWFLHQGLLLQALVHPSYSDHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMFVNNKVFANVAADRSFHRFLICDSSSLSDSVKEYVDFFKSPEFHSGSSEGPKCPKALGDIVESCIGAVLLDSGFNLKSIWNIMLSFLEPIINCPWLELSPTRELQELCQFCNLYLEFQTSKNEGLFLVEAKASNNDVCVTASTTNISKKDAVIITSRILCAKLKAKGCVLKSKSLKEVIKSSPKMEAKLIGYDETPINVTPHAVTGNKKNVQSSFYPDSSIVPVSRQACSSTLTSKNTNSSGSSGGSCTGTARSLLYQICATNCWKPPSFECCKEEGPGHLKLFTYRVIVKIDDAPDLILESFGVAQAKKRDAAENAAEGALWYLKQEGYLVKNH* 1611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01280 1610 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 577 667 IPR005034 GO:0016891
Pte11g01280 1610 Pfam PAZ domain 865 988 IPR003100 GO:0005515
Pte11g01280 1610 SUPERFAMILY dsRNA-binding domain-like 1526 1605 - -
Pte11g01280 1610 FunFam Endoribonuclease dicer-like 1 1198 1368 - -
Pte11g01280 1610 Pfam Helicase conserved C-terminal domain 405 511 IPR001650 -
Pte11g01280 1610 CDD DEXHc_dicer 43 241 - -
Pte11g01280 1610 Pfam Ribonuclease III domain 1239 1348 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 Pfam Ribonuclease III domain 1031 1163 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 Gene3D Dicer dimerisation domain 572 670 IPR038248 -
Pte11g01280 1610 SMART riboneu5 1219 1367 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 SMART riboneu5 1015 1183 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 562 IPR001650 -
Pte11g01280 1610 CDD RIBOc 1220 1366 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 FunFam Endoribonuclease dicer-like 1 384 547 - -
Pte11g01280 1610 Gene3D paz domain 857 964 - -
Pte11g01280 1610 FunFam Endoribonuclease dicer-like 1 572 668 - -
Pte11g01280 1610 ProSiteProfiles PAZ domain profile. 866 966 IPR003100 GO:0005515
Pte11g01280 1610 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1526 1601 - -
Pte11g01280 1610 SUPERFAMILY PAZ domain 872 964 IPR036085 GO:0005515
Pte11g01280 1610 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1526 1602 IPR014720 -
Pte11g01280 1610 ProSiteProfiles Ribonuclease III family domain profile. 1204 1348 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Pte11g01280 1610 Pfam DEAD/DEAH box helicase 46 189 IPR011545 GO:0003676|GO:0005524
Pte11g01280 1610 Gene3D Ribonuclease III domain 1009 1176 IPR036389 GO:0004525|GO:0006396
Pte11g01280 1610 Gene3D Ribonuclease III domain 1199 1368 IPR036389 GO:0004525|GO:0006396
Pte11g01280 1610 Gene3D - 44 296 IPR027417 -
Pte11g01280 1610 Gene3D - 387 546 IPR027417 -
Pte11g01280 1610 PANTHER DICER-RELATED 58 1443 - -
Pte11g01280 1610 SMART ultradead3 40 242 IPR014001 -
Pte11g01280 1610 FunFam Endoribonuclease dicer-like protein 39 278 - -
Pte11g01280 1610 ProSiteProfiles Ribonuclease III family domain profile. 993 1163 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 525 IPR027417 -
Pte11g01280 1610 CDD SF2_C_dicer 386 521 - -
Pte11g01280 1610 Gene3D - 1533 1602 - -
Pte11g01280 1610 SMART DRBM_3 1527 1601 IPR014720 -
Pte11g01280 1610 SMART DRBM_3 1375 1439 IPR014720 -
Pte11g01280 1610 CDD RIBOc 1015 1183 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 Pfam Dicer dimerisation domain 577 663 - -
Pte11g01280 1610 SUPERFAMILY RNase III domain-like 1205 1370 IPR036389 GO:0004525|GO:0006396
Pte11g01280 1610 SMART helicmild6 423 513 IPR001650 -
Pte11g01280 1610 CDD DSRM_DCL_plant 1534 1602 - -
Pte11g01280 1610 ProSitePatterns Ribonuclease III family signature. 1239 1247 IPR000999 GO:0004525|GO:0006396
Pte11g01280 1610 SUPERFAMILY RNase III domain-like 985 1180 IPR036389 GO:0004525|GO:0006396
Pte11g01280 1610 SMART PAZ_2_a_3 844 992 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01280 Pte-Chr11 31137334 31161285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01280 410 535 Eukaryotic Initiation Factors Gene Family AT3G19760 32.031 7.24e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01280 K11592 - qsa:O6P43_003025 2073.51