Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01262 ATGGGTGCAAGCGGGAGTCAACTGGTGTCCCGGCAATCTCGGGCCCGAGTCAATAGCACCAACCGCTTCAACCTATCTTCTCTCCTATGTGGTGGCTCCACTTCTCGCGCTATATATGAGATGGAAAACCATCCAGTTGAGCGTCAGGCACATTCTACTGAAGTTTCAGTTCCTGCCATCATTGAAGTTTGCAAAGACAGCGAGGAGTCATCTACAGCATGTTGTGCGGGGCCTAGGGATAGCATCTCCACTGCTGAAACTGGAATATCATCTCGAAGGAATTTGGAAGACAATACTGTTCAAGAAGGCATGAGGAATATTGCCAGTTTTAATGAAAGAAAGAACTTGTCTGAAAGTAAGGAGCTCGTTTCTCCTCATCAGGTAAGTGCTCATCATAGTTATGATGAATCTTCTAGGGTTAGTAGCAGCACTATTAGTTCTTCATGCGTAGGACAATCTTCAGCTCCAGTATCTATGAATGTCTTCGCTAACAAGGATGTAGTCAATGGCATTGATAATTCAGTTGATAATGATGTATCCCAAATCCTTTCCAAAGTTGTTCATTCAAGCAGCTCGTCCCCTCAAGGGCTTGGGGATTCCAGTTCTGGCATAAGTTCTGCTGAGAATGACATGGGTGGAGTTGTAGCTGTCCAGAATTCTGAGTCTGACTCTGATACTGCTGGCCAAGTTTTCAATTCACCTGTAACTTCTCAAATCCTAAGACATGAATCAACTGAAGGGACAACACCTTCAGGTTTAGGATTGCTTGTATCTAATAGAGAAAGAGGGCAAACAGATGGAAGTTTACTTCATGTTGATGTGGTTACAATTTCAACCAACATTTTGCCAAGTAATAATGGCACAAGGAACCATGAGGCAAGAAGAAATGGTAGAAGGTTATTTTGGGATGCTTTCTCGCGACGTAGTTCTAGGAGGCATGGTGATTCCCCAACTGTTGTGTTTACTGCCGATGAAATTGATAATCCTAGTTCTCGTGATAGATGGCTTCTTGATTTGAGTGGTGATATCTTTGGTAATGGGGTTGGAGATGATTCTGGACATTTAGATAGTAGAATTCACAGATTGAATGAACAGAGAGAACACTCTAGATCTGAGATATGGGAAAGACTTCGCGGTGGCCTTGATGACATAAATCGCTGGAACTACTCCTGTCCTTTAGGGCTACATCCTGATGGTGCTTGTTCGTGTGAGAGGAATCCTTTCACGGAGGAAGCAAGTACCCGTGCTAACATTTCAAGAATAGTCATGCTTGCTGAAGCTTTGTTTGAGGTGTTGGATGAAATTCATCGTCAGCCAGCTTCATTTTCCCTGTCGATGGTCTCAGTCCCAGCTCCAGAGTCAATAGTCAATTCCTTCCCTCTCAAGAATCACATAAAAGTTGACCCAAGTGATAGTGGCGATGATGTAGAACAGTGTTACATTTGCTTGGCGGATTATGAAGAAGGGGATAAGATACGAGTACTTCCATGCCAGCATGAATATCATATGGCTTGCGTTGACAAGTGGTTGAAAGAGATTCATGGTGTATGCCCCCTGTGTCGTGGAGATGTTTGCGAAGGTTTACGAGAGACTGCTGCTTCCAACACACTGGTTCCTTCTCCTCTTCATTGA 1632 0.4387 MGASGSQLVSRQSRARVNSTNRFNLSSLLCGGSTSRAIYEMENHPVERQAHSTEVSVPAIIEVCKDSEESSTACCAGPRDSISTAETGISSRRNLEDNTVQEGMRNIASFNERKNLSESKELVSPHQVSAHHSYDESSRVSSSTISSSCVGQSSAPVSMNVFANKDVVNGIDNSVDNDVSQILSKVVHSSSSSPQGLGDSSSGISSAENDMGGVVAVQNSESDSDTAGQVFNSPVTSQILRHESTEGTTPSGLGLLVSNRERGQTDGSLLHVDVVTISTNILPSNNGTRNHEARRNGRRLFWDAFSRRSSRRHGDSPTVVFTADEIDNPSSRDRWLLDLSGDIFGNGVGDDSGHLDSRIHRLNEQREHSRSEIWERLRGGLDDINRWNYSCPLGLHPDGACSCERNPFTEEASTRANISRIVMLAEALFEVLDEIHRQPASFSLSMVSVPAPESIVNSFPLKNHIKVDPSDSGDDVEQCYICLADYEEGDKIRVLPCQHEYHMACVDKWLKEIHGVCPLCRGDVCEGLRETAASNTLVPSPLH* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01262 543 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 540 - -
Pte11g01262 543 Pfam Ring finger domain 478 521 IPR001841 -
Pte11g01262 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 529 IPR013083 -
Pte11g01262 543 MobiDBLite consensus disorder prediction 121 149 - -
Pte11g01262 543 MobiDBLite consensus disorder prediction 118 149 - -
Pte11g01262 543 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Pte11g01262 543 MobiDBLite consensus disorder prediction 186 208 - -
Pte11g01262 543 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Pte11g01262 543 SUPERFAMILY RING/U-box 478 526 - -
Pte11g01262 543 SMART ring_2 479 520 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01262 Pte-Chr11 30899938 30903417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01262 390 525 C3H Transcription Factor Family AT5G45290 52.318 1.00e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01262 - - qsa:O6P43_023995 644.425