Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01235 ATGAATGCCATTTGTATGGAGCTTCAACTGGGTCTGGCTCTGGCTCTTCCACGCAATATCACTCAAGGGTTTGACTTGAATTCTCATGCAAACGAAGCTGCTGCTTCTGTGAATCGTGACCATCACGATGACTCTTCTCTCACTAGCACTTGCACCTCGGATTTCAATGATGATACCAAATGCAAGAAACGTGGTTTTGGGCGAGCATTTGAGAATCACAATGAGGATGATTATGATCGTCATGGAATGGATTGTCAGAGCCTTCTGCCTTTCCTGCCATTGACACCGCATCGACCCAACGAGGATGACAAGCACCCTCATGATTATGAAGATCATCGTGACTATTCCTCCAACATCATTCAGAATGAAGAGGCTTTGGCGGGTTGGCCGCCCATTAGTTCAAGGAGAAAGAAACTTTGCAACAATAACAGAAGCAGTAATCTGCAGAGAGATGTAGTGGTAGAGGTTAATCGCTCTTATTTTGTTGGGCGCAGAGCATCAAACTCCATGTTCGTCAAGGTCAAGATGGAAGGAGTAGGCATAGCAAGGAAAGTCGACCTTAGTTTGTATCACTCAGTCGAAAAGCTAAAGGGAACCTTGATGAACATGTTCGGGAAATCGGCAACAGGGCAAGAAAATCCTGATTGTTACAAACTCACTTACCAAGACACGGAAGGTGACTGGTTGCTTGCAGAAGATGTGCCATGGAGGGGTTTCATCCAATCAGTTCAACGTCTTGAATTGGTGAAGAACATGGATGGAATGATCTGA 771 0.4514 MNAICMELQLGLALALPRNITQGFDLNSHANEAAASVNRDHHDDSSLTSTCTSDFNDDTKCKKRGFGRAFENHNEDDYDRHGMDCQSLLPFLPLTPHRPNEDDKHPHDYEDHRDYSSNIIQNEEALAGWPPISSRRKKLCNNNRSSNLQRDVVVEVNRSYFVGRRASNSMFVKVKMEGVGIARKVDLSLYHSVEKLKGTLMNMFGKSATGQENPDCYKLTYQDTEGDWLLAEDVPWRGFIQSVQRLELVKNMDGMI* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01235 256 ProSiteProfiles PB1 domain profile. 169 251 IPR000270 GO:0005515
Pte11g01235 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 253 IPR003311 GO:0005634|GO:0006355
Pte11g01235 256 Pfam AUX/IAA family 7 253 IPR033389 -
Pte11g01235 256 Gene3D - 164 255 - -
Pte11g01235 256 SUPERFAMILY CAD & PB1 domains 163 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01235 Pte-Chr11 30590224 30591748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01235 172 246 B3 DNA Binding Superfamily AT2G46530 35.526 1.17e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte11g01235 AUX_IAA 5.2e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01235 K14484 - qsu:112012600 173.326