Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01228 ATGGCGCTTCCCGGTTCTCTGCATTTGTCCCCAAGTTTGGGGCTTTGCAGGAACCAGGGCTTATATTTCAATAACCAATCTCCGAATCTTCGTTGTGGAAGACACAAGTTAAAAAAATTGTGTGCGTTGAACACTGCTCTGTCGTCACGCATTTCGTTTCTTAAACAGGATCGCTGGGGTGTCCAGTTTTTTGATAGTGTGTCTCGTACTGTACCTCTCAAAGTAGATGCTTTTAGGTGCCACTCTTCTCTTGTACCTGGCCAACCTGGTGAAGATACCCTCGTTAAGACTGTTTTGAAGGCTCTGGCAAGGTCAAGTACTGGTTTACAAAGTTCCCCTGTCATATTGAATCTGGTACCAGCTGTTGGTATTATTATTTTCGCTGTGTGGGGTATTGGACCATTGCTGTGTCATGCAAGAGGCTTACTTCTAAATGAGCGTGATAGTAATTGGGAAAAGAGTGGGACATATCATGTTATGACCTCTTATATCCGGCCAATGTTATTGTGGACAGGAGCAATACTCATTTGCAGAGCATTGGATCCTATGGTTCTTCCCACGGATGCCAGCAAGATGGTTAAGCAGCGTGTATTGAACTTTGTGAGATCACTGTCGACTGTGCTGGCCTTTGCCTATTGTTTATCCAGAGTGATTCAAAATGCCCAAAATTTCTTAATGGAGACAAGTTACTCTAAGGACCCTCGAAATATGGGATTCCAATTTGCGGGTAAAGCTTTATATTCTGCGGTTTGGATTGCTGCTCTTTCGTTGTTTATGGAATTGCTGGGTTTCTCTACCCAGAAATGGGTTACTGCTGGAGGTCTAGGGACAGTTTTGCTGACTCTTGCTGGTCGTGAGATATTCACAAACTTTCTTTCAAGTGCAATGATTCATGCAACGCGGCCCTTCGTTGTGAATGAATGGATTCAGACAAAAATTGAAGGATATGAAGTTTCTGGTACTGTTGAGCATGTTGGATGGTGGTCACCAACTATTATAAGAGGTGAAGATCGGGAAGCTGTTCACATTCCAAACCACAAGTTTACAGTGAATGTTGTGCGGAACCTCACTCAAAAAACTCATTGGAGAATCAAAACCCATCTAGCCATCAGTCATTTGGATGTCAATAAGATAAATATCATTGTTGCTGATATGAGAAAGGTGTTGGCTAAAAATCCGCAAGTTGAACAGCAAAAGTTGCATAGAAGGGTATTTCTGGACAATGTCAATCCTGAAAGCCAGAGTCTTCTGATCATGGTGTCTTGTTTTGTGAAGACCTCTCACTTTGAAGAGTATCTACGTGTTAAGGAAGGTATATTGCTGGATCTTCTTAAAGTTATCAGTCATCATGGTGCCCGACTTGCAACTCCAATCCGTACCATGTATAAAATGTACAGCGATGCTGATTCTGAAAGCACAGCACACACAGATTCAGAACTCAGTCGCCCTGGGCCAGTATCTTACCGTCCATTGCTAATGATTGAACCTCCTAGTCAAAGAGTAAATGGGGAAGACATGAAGAGTCAAAATCAACAAATGCGCACAGGTGGTGAACAAGATGTTCAGACCGCAATGCAATCAAAATCTGATGGAAAGAAAGACGATAAGGTTGGAGTATCATCTGTGACTGACTCCAAAGTCAAAGAAACTCCATCTAAATTTAAGGCAGGTTCTCATACAGATCTAACATCACATTCTCAAAGCGTGGATGACATTACATTCAACGAGGGATCTCAATCTGATCTTGAAGTCAGTCAAGCGGCTGCCCTGAAATCACATTCAGGCAGTACTTCAAAAGGAAATCTCGACGTTTCTGACGGGATTGCCATAGAACCAGCTTCTGGAGTAGCACCTGATATTCCAACCCAGAAAACATCTGTTAGTAAACAATCCAATGGTCATACTGGTGGGGATTCCAGAGATAGGGATTCTGACTGTTTGATTTCATCATCATTTAACTCTGCTGACAAACTTCACAAGTCCGTGGCGGCTTCATCATTGAAATATGATGATGAAAAGAAACCAGTTGCGAGCCCCCCCGCATCAAGGACTCCTTTGCAGGAAAATATAGTTCTTGATGTTGCCTTAGCAGGATCGAAGAAGACCCTTCCTATTGAAGAGGAGATGGATTCCCCTCCTAGTAGTGAAGAGGCAAGGCAAGTGACCACACGAGGTAGTGGGAATGGCCCTTCAGCAGCTGAGACTGATAGGAAAACGGCAAGCAATCAGTAA 2232 0.4319 MALPGSLHLSPSLGLCRNQGLYFNNQSPNLRCGRHKLKKLCALNTALSSRISFLKQDRWGVQFFDSVSRTVPLKVDAFRCHSSLVPGQPGEDTLVKTVLKALARSSTGLQSSPVILNLVPAVGIIIFAVWGIGPLLCHARGLLLNERDSNWEKSGTYHVMTSYIRPMLLWTGAILICRALDPMVLPTDASKMVKQRVLNFVRSLSTVLAFAYCLSRVIQNAQNFLMETSYSKDPRNMGFQFAGKALYSAVWIAALSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINIIVADMRKVLAKNPQVEQQKLHRRVFLDNVNPESQSLLIMVSCFVKTSHFEEYLRVKEGILLDLLKVISHHGARLATPIRTMYKMYSDADSESTAHTDSELSRPGPVSYRPLLMIEPPSQRVNGEDMKSQNQQMRTGGEQDVQTAMQSKSDGKKDDKVGVSSVTDSKVKETPSKFKAGSHTDLTSHSQSVDDITFNEGSQSDLEVSQAAALKSHSGSTSKGNLDVSDGIAIEPASGVAPDIPTQKTSVSKQSNGHTGGDSRDRDSDCLISSSFNSADKLHKSVAASSLKYDDEKKPVASPPASRTPLQENIVLDVALAGSKKTLPIEEEMDSPPSSEEARQVTTRGSGNGPSAAETDRKTASNQ* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01228 743 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 730 IPR045042 -
Pte11g01228 743 MobiDBLite consensus disorder prediction 527 555 - -
Pte11g01228 743 Gene3D - 198 301 - -
Pte11g01228 743 MobiDBLite consensus disorder prediction 469 567 - -
Pte11g01228 743 Gene3D - 303 358 IPR023408 -
Pte11g01228 743 MobiDBLite consensus disorder prediction 663 677 - -
Pte11g01228 743 MobiDBLite consensus disorder prediction 585 603 - -
Pte11g01228 743 Pfam Mechanosensitive ion channel 244 453 IPR006685 GO:0016020|GO:0055085
Pte11g01228 743 MobiDBLite consensus disorder prediction 663 743 - -
Pte11g01228 743 SUPERFAMILY Sm-like ribonucleoproteins 287 357 IPR010920 -
Pte11g01228 743 MobiDBLite consensus disorder prediction 585 648 - -
Pte11g01228 743 MobiDBLite consensus disorder prediction 715 743 - -
Pte11g01228 743 MobiDBLite consensus disorder prediction 619 634 - -
Pte11g01228 743 MobiDBLite consensus disorder prediction 502 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01228 Pte-Chr11 30511358 30518337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01228 686 743 Mechanosensitive Ion Channel Family AT5G10490 53.333 4.10e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01228 K22047 - qsa:O6P43_033239 801.971