Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01225 ATGTTGTTTTCATTGCTATTAGTTGCTTATGTTGGTTGCTATTTGTTATTCAGCAAAATGGAATCCGGTGTTAAGCACGCTGTCGTGGTGAAGGTTATGGGCCGTACTGGCTCACGAGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGATGATCAGAACCGTTACATTATGAGGAACGTGAAAGGACCAGTGAGGGAAGGAGATATTCTGACCCTTCTCGAGTCAGAAAGAGAAGCTAGAAGATTGCGCTGA 255 0.451 MLFSLLLVAYVGCYLLFSKMESGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01225 84 Gene3D - 18 84 IPR012340 -
Pte11g01225 84 PANTHER 40S RIBOSOMAL PROTEIN S28 20 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pte11g01225 84 Pfam Ribosomal protein S28e 24 83 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pte11g01225 84 CDD S1_S28E 25 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pte11g01225 84 Hamap 30S ribosomal protein S28e [rps28e]. 20 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pte11g01225 84 FunFam 40S ribosomal protein S28 18 84 - -
Pte11g01225 84 ProSitePatterns Ribosomal protein S28e signature. 75 83 IPR028626 -
Pte11g01225 84 SUPERFAMILY Nucleic acid-binding proteins 20 84 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01225 20 85 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.394 7.48e-36 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01225 K02979 - vri:117919757 102.449