Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01223 ATGCCTTTGGTTTATTATCAGATCAATGGCGGAACTGTTGTTCTGAGCAGCCCTCCTTTGCCTTCACCTTTGCTACCATCTTCCGCTCGTTCGTTACCATACCAGAGAGAGTTTCAAAAGCAATCAACTCCAACCTCAGTTGCAGAATCCTCCTCTGGAAGTAAAATAAGCCCATCAATTCTTGTTATTATAGTTGTTCTGGCTGTCGTGTTCTTCATATCTGGTCTGCTTCACTTGCTTGTTAGATACCTCATGAAGCATAGATCTTCATCGTCAATATCTGAGTCCAGTAGATACCCAGATATGTCAGGATCTGATGCTTACCAGAGACAATTACAGCAGCTTTTCCATCTCCATGATTCAGGCTTAGACCAGGCTTTCATAGATGCACTGCCTGTCTTCTTGTACAAGGATATAATTGGTTTGAAACAGCCGTTTGACTGTGCTGTTTGCCTTTGTGAATTCACAGAACTAGACAAACTCAGGTTGCTTCCTTCGTGCAATCATGCTTTTCACTTAGACTGTATAGATACATGGTTGATGTCCAATTCAACATGCCCTCTTTGTAGAGGATCACTATATGCGCCTGGAGTTGTCATTGAGAACCCAGTTTTTGACTCTGAGGATCCTACAGAAAATGGCTTCTCAGGGAATGGAGGAAGCGGGGACTCTAACGTTCAGAAACCTCCAGAGAATCATATTACTGTTGGAAAGAGAGTGTTCTCTGTGAGATTGGGAAAATTTACAAGCTCAAATTATGCAGGAGTAGAAAGACAAGGGGAAAGCAGCAACAGTAACTTGGATGCAAGGAGATGCTATTCAATGGGGTCATGCCAATACGTGGTTGCTGATTCAGATTTGCAAGTAGTCTTGTGTCCAAATAGAGGTGAAAGTAGCAGGCATTTGAAAGATAGACCAATCCAAAATGGAGATTCCTCAACCAATGAGGACGCTGAAGGAAAAAAACTGAAGGTTGGAAGTAAAGGTGAAAGCTTTTCTGTGTCCAAAGTCTGGCTATGGTCTAAGAAGGGAAAAGGCCCAAGTTCTTCAGAATCCCAGTTGAGAACTTCTGCATTTGTTGCTGGTTTGCCGTTAACTAATAGAACACAGCTTACACTAAGGTAA 1125 0.424 MPLVYYQINGGTVVLSSPPLPSPLLPSSARSLPYQREFQKQSTPTSVAESSSGSKISPSILVIIVVLAVVFFISGLLHLLVRYLMKHRSSSSISESSRYPDMSGSDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKQPFDCAVCLCEFTELDKLRLLPSCNHAFHLDCIDTWLMSNSTCPLCRGSLYAPGVVIENPVFDSEDPTENGFSGNGGSGDSNVQKPPENHITVGKRVFSVRLGKFTSSNYAGVERQGESSNSNLDARRCYSMGSCQYVVADSDLQVVLCPNRGESSRHLKDRPIQNGDSSTNEDAEGKKLKVGSKGESFSVSKVWLWSKKGKGPSSSESQLRTSAFVAGLPLTNRTQLTLR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01223 374 FunFam RING-H2 finger protein ATL46 110 195 - -
Pte11g01223 374 SUPERFAMILY RING/U-box 127 196 - -
Pte11g01223 374 Pfam Ring finger domain 147 190 IPR001841 -
Pte11g01223 374 CDD RING-H2_EL5-like 147 190 - -
Pte11g01223 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 338 - -
Pte11g01223 374 MobiDBLite consensus disorder prediction 297 325 - -
Pte11g01223 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 195 IPR013083 -
Pte11g01223 374 MobiDBLite consensus disorder prediction 209 228 - -
Pte11g01223 374 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Pte11g01223 374 SMART ring_2 148 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01223 Pte-Chr11 30431838 30433213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01223 50 350 C3H Transcription Factor Family AT2G18650 39.583 5.63e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01223 - - qsa:O6P43_025322 452.595