Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01215 ATGTCTCGCGTTTATGTTGGGAATTTAGATCCTCGAGTTTCTGAGAGGGACCTCGAAGATGAATTTCGAATCTACGGAGTTCTGAAAAGTGTTTGGGTTGCTCGAAGACCACCTGGATATGCCTTTATTGAATTTGATGATAGGAGGGATGCGCTTGATGCAATTCATGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCATAACTCTAAAGGTGGTGGAGGCCGTAGTGGAGGACGGAGTCGTGGAGGTGAAGACTCTAATTGTTACGAGTGTGGCGAGCCTGGCCATTTTGCTAGGGAATGTCGTTTGCGCATTGGCTCACGGGGCTTAGGAAGTGGACGGCGTCGAAGCCCTAGTCCTTATCGTCGCCGTCGAAGTCCGAGTTATGGGTATGGACGCAGGAGTTATAGCCCACGTGGAAGAAGATCACCCAGGCGACGCAGTGTTACTCCTCCTCGACGTGGTCGCAGCTACAGCAGATCCCCTCCATATCGCTATGCTCGTCGTGGCTCACCTTATGCCAATGGAGATTAA 543 0.5083 MSRVYVGNLDPRVSERDLEDEFRIYGVLKSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRSGGRSRGGEDSNCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYGRRSYSPRGRRSPRRRSVTPPRRGRSYSRSPPYRYARRGSPYANGD* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01215 180 SMART c2hcfinal6 90 106 IPR001878 GO:0003676|GO:0008270
Pte11g01215 180 MobiDBLite consensus disorder prediction 111 180 - -
Pte11g01215 180 CDD RRM_SRSF3_like 3 71 - -
Pte11g01215 180 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 77 151 - -
Pte11g01215 180 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 168 - -
Pte11g01215 180 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Pte11g01215 180 MobiDBLite consensus disorder prediction 67 89 - -
Pte11g01215 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Pte11g01215 180 SMART rrm1_1 3 69 IPR000504 GO:0003723
Pte11g01215 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Pte11g01215 180 Gene3D - 79 151 - -
Pte11g01215 180 Pfam Zinc knuckle 90 105 IPR001878 GO:0003676|GO:0008270
Pte11g01215 180 ProSiteProfiles Zinc finger CCHC-type profile. 91 105 IPR001878 GO:0003676|GO:0008270
Pte11g01215 180 Gene3D - 2 69 IPR012677 -
Pte11g01215 180 SUPERFAMILY Retrovirus zinc finger-like domains 81 107 IPR036875 GO:0003676|GO:0008270
Pte11g01215 180 MobiDBLite consensus disorder prediction 141 156 - -
Pte11g01215 180 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01215 Pte-Chr11 30335092 30338887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01215 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 3.04e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01215 K12896 - rcu:8262005 196.052