Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01185 ATGGATAGATTGAAACATTTGGACGCTGATTATGAAGTGACAGAGATTCAGACACTAGGAGGTCACGATGATAGAGTTTGGAGTTTGGCTTGGAACCCTGCCACTGGTCATGGTGGAATACCACTTGTCTTGGCTTCTTGTAGTGGTGACAAAACTGTTAGGATCTGGGAACAGAGTCTTTCCTCTGGTTTATGGGATTGCAAGGCAGTTTTGGAGGAGACACATACAAGAACGGTTCGATCCTGTGCTTGGTCACCATCTGGGAAATTGTTGGCTACTGCAAGTTTTGATGCTACTACAGCCATTTGGGAAAATCATGGGGGTGATTTTGAATGTGTCTCCACTTTGGAGGGTCATGAAAATGAAGTCAAAAGTGTATCTTGGAATGCATCAGGGTCTTTGCTTGCTACATGTGGACGAGATAAATCTGTTTGGATATGGGAAGTTCTGCCTGGTAATGAGTTTGAGTGTGTTTCTGTACTGCAAGGACATACACAAGATGTAAAAATGGTCCAGTGGCATCCTTCTATGGATGTTCTATTTTCTTGCAGCTATGATAACACTGTAAAGGTATGGGCAGATGAAGGCGATAGTGATGACTGGACCTGTATTCAAACTTTAGGTGAAGCTAACAACGGTCATACTTCTACTGTTTGGGGTATCTCTTTCAATCCTAGTGGAGATAGAATGGTCACATGTAGCGATGATCTTACACTGAAAATATGGGAAACAGATAGAGAAAGGATGCACTATGGCGAGGGCTTTGCATCTTGGAGACATGTTTGTACTCTAAGCGGTTTTCATGATCGGACAATTTTCTCTGTCCATTGGTCAAGACAAGATATAATAGCCAGTGGAGCAGCAGATGATGGCATACGTTTTTTTGTGGAAAACGATGAAAACTTGAGTGACTGTCCATCGTATAAACTTCTTCTCAATAAAGACAATGCCCATGGAATGGATGTGAATTCAGTGCAATGGAGCCCCGGGGACAAACAAGTAATCGCCTCTGCAAGCGATGATGGGAATGTAAAGATATGGGAGTTGGTGTCACGGCAGTGA 1062 0.4303 MDRLKHLDADYEVTEIQTLGGHDDRVWSLAWNPATGHGGIPLVLASCSGDKTVRIWEQSLSSGLWDCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENHGGDFECVSTLEGHENEVKSVSWNASGSLLATCGRDKSVWIWEVLPGNEFECVSVLQGHTQDVKMVQWHPSMDVLFSCSYDNTVKVWADEGDSDDWTCIQTLGEANNGHTSTVWGISFNPSGDRMVTCSDDLTLKIWETDRERMHYGEGFASWRHVCTLSGFHDRTIFSVHWSRQDIIASGAADDGIRFFVENDENLSDCPSYKLLLNKDNAHGMDVNSVQWSPGDKQVIASASDDGNVKIWELVSRQ* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 72 104 - -
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Pte11g01185 353 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 11 351 IPR028608 GO:0016226|GO:0097361
Pte11g01185 353 PRINTS G protein beta WD-40 repeat signature 44 58 IPR020472 -
Pte11g01185 353 PRINTS G protein beta WD-40 repeat signature 230 244 IPR020472 -
Pte11g01185 353 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 192 IPR001680 GO:0005515
Pte11g01185 353 Gene3D - 43 353 IPR015943 GO:0005515
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 353 IPR001680 GO:0005515
Pte11g01185 353 CDD WD40 15 348 - -
Pte11g01185 353 Pfam WD domain, G-beta repeat 156 192 IPR001680 GO:0005515
Pte11g01185 353 Pfam WD domain, G-beta repeat 66 103 IPR001680 GO:0005515
Pte11g01185 353 Pfam WD domain, G-beta repeat 16 56 IPR001680 GO:0005515
Pte11g01185 353 Pfam WD domain, G-beta repeat 111 147 IPR001680 GO:0005515
Pte11g01185 353 Pfam WD domain, G-beta repeat 317 347 IPR001680 GO:0005515
Pte11g01185 353 Pfam WD domain, G-beta repeat 202 242 IPR001680 GO:0005515
Pte11g01185 353 ProSitePatterns Trp-Asp (WD) repeats signature. 135 149 IPR019775 -
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 243 IPR001680 GO:0005515
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 19 57 - -
Pte11g01185 353 ProSitePatterns Trp-Asp (WD) repeats signature. 335 349 IPR019775 -
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 161 192 - -
Pte11g01185 353 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 11 353 - -
Pte11g01185 353 SUPERFAMILY WD40 repeat-like 14 347 IPR036322 GO:0005515
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 104 IPR001680 GO:0005515
Pte11g01185 353 PANTHER WD40 PROTEIN CIAO1 14 352 IPR028608 GO:0016226|GO:0097361
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 243 - -
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 19 57 IPR001680 GO:0005515
Pte11g01185 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 353 - -
Pte11g01185 353 SMART WD40_4 154 193 IPR001680 GO:0005515
Pte11g01185 353 SMART WD40_4 64 104 IPR001680 GO:0005515
Pte11g01185 353 SMART WD40_4 200 243 IPR001680 GO:0005515
Pte11g01185 353 SMART WD40_4 257 296 IPR001680 GO:0005515
Pte11g01185 353 SMART WD40_4 12 57 IPR001680 GO:0005515
Pte11g01185 353 SMART WD40_4 307 348 IPR001680 GO:0005515
Pte11g01185 353 SMART WD40_4 109 148 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01185 Pte-Chr11 30040681 30045475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01185 87 351 U-box Gene Family AT2G33340 24.906 1.62e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01185 K24730 - qsa:O6P43_009566 612.838