Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01175 ATGGCTGAAACGCCGTCGTCCCAGACACAACCACATTCCTCCGATCCCTCTGCCTCCCGCCTCTATTGGTGCTACCACTGTGACAAGCATGTTTCGATTGCCGATAATCCTCAGAATCTCGCTGACATCAAGTGTACTGAGTGCAACTCTGGCTTCGTTGAATCCATATCAACTGCAGCTCCTCTTCCTTCTTCGCCTTTGCCACCCCGGTCTCCAGATCCTGCTGGCGACCCTAATTTTGGGTCACAGTTTCTTCAGATTCTACGGCTAATCTCACACTCGGCGCGTGATGACGAAGACTCTCCTCCCCCGCCACCTCCCCCGCCCAATCGTTCTCATGAAGATTTTCTCAGAATTGAGATTGGTGGTTGGGAAAACGACGACGATAACGACGACGACGAAGAAGGAGAAGAACAAGAGCTGGAGGATGTGGATGATGAACACCAGCATAGAGTTGAAGAGAATCGGAGCGAGATCGAAGACCCGCGAGGAGAACATCTTGCGGAGCCGGAAGATGAGGAAGATGTACGGAGAATAAGGCGTGCATTGTTGCGCAGTCGGATCCGGAACTTGGCGACCCAAACTAGAATCGGGAGTAATCGGATCTTAGACTGGGCAGAAGTATTAATGGGTCTGGAAGATAATTCAATAGAGTTTCGGCTTCAAGTGCCGGAATTGGACCGATACGTAGGTAACCCGGAGGACTACGTTGATGGGGCGGCATACGACGCTTTACTTCAGACCCTAGCAGAAAGTGAAGGAGGTGGGAGGAAGGGAGCTCCACCGGCTGCGAAGTCGGCTGTTTCAGCATTACCGACGGTAGTCATCACGATGAACGAGGAGGCTGTCGTTTGCGCTGTATGTAAGGACATGTTGTCTGTTGGCGAAACAGCAAAGAAGTTACCATGTGGGCACTTGTACCATGGAAATTGTATCGAGCCTTGGTTAGCATCCAGGAACTCATGCCCGGTCTGCCGATTTGAGTTACCCACTGATGATCCCGACTACGAAGAGGAGAGGAGGAAGAAAGTATCGGCTATGGCCAGTGGGGCTTCGGGTTCGGGTCGATCAGATACAACATCCAATTGGTGGGACTAA 1098 0.5173 MAETPSSQTQPHSSDPSASRLYWCYHCDKHVSIADNPQNLADIKCTECNSGFVESISTAAPLPSSPLPPRSPDPAGDPNFGSQFLQILRLISHSARDDEDSPPPPPPPPNRSHEDFLRIEIGGWENDDDNDDDEEGEEQELEDVDDEHQHRVEENRSEIEDPRGEHLAEPEDEEDVRRIRRALLRSRIRNLATQTRIGSNRILDWAEVLMGLEDNSIEFRLQVPELDRYVGNPEDYVDGAAYDALLQTLAESEGGGRKGAPPAAKSAVSALPTVVITMNEEAVVCAVCKDMLSVGETAKKLPCGHLYHGNCIEPWLASRNSCPVCRFELPTDDPDYEEERRKKVSAMASGASGSGRSDTTSNWWD* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01175 365 SMART ring_2 285 325 IPR001841 -
Pte11g01175 365 MobiDBLite consensus disorder prediction 144 174 - -
Pte11g01175 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 332 IPR013083 -
Pte11g01175 365 FunFam E3 ubiquitin-protein ligase RING1-like 248 332 - -
Pte11g01175 365 ProSiteProfiles Zinc finger RING-type profile. 285 326 IPR001841 -
Pte11g01175 365 MobiDBLite consensus disorder prediction 125 143 - -
Pte11g01175 365 MobiDBLite consensus disorder prediction 336 365 - -
Pte11g01175 365 Pfam Ring finger domain 285 326 IPR001841 -
Pte11g01175 365 Pfam zinc-ribbon 21 56 IPR039525 GO:0061630
Pte11g01175 365 MobiDBLite consensus disorder prediction 59 81 - -
Pte11g01175 365 MobiDBLite consensus disorder prediction 350 365 - -
Pte11g01175 365 SUPERFAMILY RING/U-box 280 332 - -
Pte11g01175 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 138 330 - -
Pte11g01175 365 MobiDBLite consensus disorder prediction 95 114 - -
Pte11g01175 365 MobiDBLite consensus disorder prediction 123 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01175 Pte-Chr11 29892990 29894666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01175 208 344 C3H Transcription Factor Family AT5G01980 46.043 6.90e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01175 - - gmx:100802200 353.984