Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01163 ATGCTCTGCGTTACCGGTAAGGGTGGGAGAGTGCATAATAATACAATAGTAGTATCTGATAGTTACCGCTTACCACCGCATCTTCTTCGTTGGAATGATTCTGTCAATCGACCTGGGGTGAGTGAAGAAAATGCTGCTGCAAGTGATGAAAGATTGATATATCAGGCAGCACTTGAGGATCTTAACCAACCAAAAGTCGAGGCTTCTTTACCTGAAGGGCTTTTGTCTGTCTCTCTTTTTAGACATCAGAAAATTGCATTAGCTTGGATGCTGCAAAAGGAAAATAGAAGCCTGCATTGTTTGGGTGGAATATTAGCTGATGATCAGGCCTATGCTGCTGCTGGTACTGTCAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTTCGGCAAGCATGCGATCATCCATTTCTCATTAAAGATTGTGATAGTAACTCCGGGGCATATGGCAGACTTTCAGTTGAAATGGCCAAGTGCCTTCCAAAGGATATGCTGATTAATCTTTTGAATTGCTTGGAAACATCTTTTGCGATATGCAGCGTTTGTGATGATCCACCAGAGGACCCTGTTGTTACCATGTGCGGCCATGTTTTCTGCTATCAGTGTGTGTCAGATAATATGACTGGGGATGATAATACATGCCCTGCCCGTGGTTGCAAGGAACAACTGGTAGTACAGCAGAGCGAGTACAGCTCCTCAAAAATTAGAGCAGTTCTTGAGATCTTGCAGTCTCATAGTAGATTGAAGGGTTCAATGTCTGATCTGCATGGTTCCTCAGGGAACGGTGATAGTAGTTTTTCGGGAAATACACTTGCTGAAGAAAAAGAAAGAAGTACTTGGTCTGAGTCAAATCATGAAGGACCAGAAAAAGTTATTGTTTTCTCGCAATGGACTAGTATGTTGGATTTGGTCGAGATGGCATTGAATCAGGCTTGTATAGAATACAGAAGACTTGATGGTACAATGTCACTGGCTTCAAGAGATAAGGCCGTTAAAGATTTCAACACTGATCCTGAGGCCTGTAATGTAGGTCTCGTTCTTCTTGGAATTTTATCACTGGGCATGAAGATGTACTTCTCAGCTAGTATATTTTATCACTGCTTGTTAACAGTCATGCTGATGTCTTTAAAAGCAGGAAATCTTGGGTTGAACATGGTTGCTGCATCTCGTGTTATTCTTTTGGACCTTTGGTGGAATCCAACTACTGAAGATCAGGCTGTTGATCGAGCTCATAGAATTGGACAGACTCGTCCCGTCACTGTAACCAGGTTAACTGTTAAAGATACGGTGGAAGATAGAATCTTAGCTCTCCAGGAAGAGAAGAGAAAAATGGTTGCTTCTGCTTTTGGTGAGGAGCATGCTGGGGCATCTGCAACTCGCCTTACAGTGGAAGATTCAAGTATCTTTTCATGGTATAGAACCAGATGCGTGCCTCCTAGTAGGGTTTTACATAAATGGATCTCTTGTATGAAAACTAGAGGATAG 1491 0.4205 MLCVTGKGGRVHNNTIVVSDSYRLPPHLLRWNDSVNRPGVSEENAAASDERLIYQAALEDLNQPKVEASLPEGLLSVSLFRHQKIALAWMLQKENRSLHCLGGILADDQAYAAAGTVNQNYANILLMLLRLRQACDHPFLIKDCDSNSGAYGRLSVEMAKCLPKDMLINLLNCLETSFAICSVCDDPPEDPVVTMCGHVFCYQCVSDNMTGDDNTCPARGCKEQLVVQQSEYSSSKIRAVLEILQSHSRLKGSMSDLHGSSGNGDSSFSGNTLAEEKERSTWSESNHEGPEKVIVFSQWTSMLDLVEMALNQACIEYRRLDGTMSLASRDKAVKDFNTDPEACNVGLVLLGILSLGMKMYFSASIFYHCLLTVMLMSLKAGNLGLNMVAASRVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEEHAGASATRLTVEDSSIFSWYRTRCVPPSRVLHKWISCMKTRG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01163 496 ProSiteProfiles Zinc finger RING-type profile. 181 217 IPR001841 -
Pte11g01163 496 ProSitePatterns Zinc finger RING-type signature. 196 205 IPR017907 -
Pte11g01163 496 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 45 109 - -
Pte11g01163 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 455 IPR027417 -
Pte11g01163 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 469 IPR001650 -
Pte11g01163 496 SMART ring_2 181 219 IPR001841 -
Pte11g01163 496 MobiDBLite consensus disorder prediction 254 276 - -
Pte11g01163 496 MobiDBLite consensus disorder prediction 254 286 - -
Pte11g01163 496 SMART helicmild6 304 416 IPR001650 -
Pte11g01163 496 CDD SF2_C_SNF 284 426 - -
Pte11g01163 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 228 IPR013083 -
Pte11g01163 496 Gene3D - 72 472 IPR027417 -
Pte11g01163 496 Pfam Helicase conserved C-terminal domain 287 416 IPR001650 -
Pte11g01163 496 Pfam Zinc finger, C3HC4 type (RING finger) 181 217 - -
Pte11g01163 496 SUPERFAMILY RING/U-box 177 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01163 Pte-Chr11 29655226 29661894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01163 111 469 RAD5 or RAD16-like Gene Family AT1G61140 48.205 1.27e-100 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01163 - - qsa:O6P43_032256 478.018