Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01162 ATGGCTGGCGGAGGAAGAGGAAGCACATCTACAAGGTCAAATCCACCTAAGGTCCGTAAACAAGTTGACGCTTCTTCCGGTTCAGAAGCCACTGGTCAGACTAACTCCCTCGTTCGCGCCAAAGATGGCAGTGCTTTTGCCAAATGTGAGGAGTGCAGCAAGGATGTCCCTGTGGCGCTCATCAGCTTTCACAGTTGTAGCCTCGATGCTAAAATCAAAATGGATCTCAAAGCCCAGGTTGTTGAAAAGCCAGCTGAAATCAAGAAGCCGGCAGAAAAAAAGAAAGCAAAATCTACGCAAAGCAAATCCAAAAGGCCCAGACTTGAAAAGAAGGGAACCAAGTCCAAGGACAAAGATCCCAATATGCCTAAACGCCCTCCAACTGGCTTCTTCCTCTTCATGGATGACTTCCGCAAAGAGTATAAGGAAGCGCATCCTGACAAGAAAGATGTTAAAGCAGTTGCTAAGGAAGGCGGTGAGAGGTGGAAGTCTATGACCGAAGAAGAGAAGAAGCATTATATGGACAAAGTTGCAGCGCTGAAGGCTGAATATGAGAAGGCCATGGAGGCTTATAATGCTCAAGATCAAGACGTTGGATCAGAAGGGGAAGGTGGGTCTGACAAGGAAGCTCCTGATAATGAAGTCGAAGAAATATCAGATGGGGAGTAG 669 0.4709 MAGGGRGSTSTRSNPPKVRKQVDASSGSEATGQTNSLVRAKDGSAFAKCEECSKDVPVALISFHSCSLDAKIKMDLKAQVVEKPAEIKKPAEKKKAKSTQSKSKRPRLEKKGTKSKDKDPNMPKRPPTGFFLFMDDFRKEYKEAHPDKKDVKAVAKEGGERWKSMTEEEKKHYMDKVAALKAEYEKAMEAYNAQDQDVGSEGEGGSDKEAPDNEVEEISDGE* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01162 222 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 17 209 - -
Pte11g01162 222 Pfam HMG (high mobility group) box 123 192 IPR009071 -
Pte11g01162 222 Gene3D High mobility group box domain 107 202 IPR036910 -
Pte11g01162 222 MobiDBLite consensus disorder prediction 190 222 - -
Pte11g01162 222 Coils Coil 163 197 - -
Pte11g01162 222 SUPERFAMILY HMG-box 115 195 IPR036910 -
Pte11g01162 222 CDD HMG-box_AtHMGB1-like 124 184 - -
Pte11g01162 222 MobiDBLite consensus disorder prediction 82 130 - -
Pte11g01162 222 MobiDBLite consensus disorder prediction 1 39 - -
Pte11g01162 222 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 123 192 IPR009071 -
Pte11g01162 222 MobiDBLite consensus disorder prediction 82 123 - -
Pte11g01162 222 SMART hmgende2 122 193 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01162 Pte-Chr11 29643730 29645695 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte11g01162 HMG_box 1.3e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01162 K25507 - qsa:O6P43_026184 281.182