LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g01140	ATGACAACAGATTTTTCACAGAAAATGGAAAACATTCTTAGTCTTTGTTACAAGGAGGATGAACCGATGGACTTGCCACCTGGATTTCGGTTTCACCCTACAGATGAAGAGCTCATAAGTCATTACCTGCACCCCAAGGTTATCAACATCAACTTCGCTTGCAAAGCCATTGGATTTGTGGACTTGAACAAGTCTGAGCCCTGGGACTTGCCATGGAAAGCAAACATGGGAGAAAAAGAGTGGTACTTTTTTTGTGTCAGAGACAGAAAGTATCCAACAGGTTTGAGAACCAACAGAGCCACTGAAGCTGGATACTGGAAAGCAACAGGGAAAGACAAGGAGATCTACAAAGGAACATCACTAGTTGGAATGAAGAAAACTTTGGTTTTCTACAGAGGCAGAGCACCTAAAGGAGAAAAAACCAATTGGGTTATGCATGAGTACAGATTAGATGGTAAGCTCTCAGTTCACAACCTTCCCAAAACTGCAAAGAATGAATGGGTGATAAGCAGAGTGTTTCAGAAAACTATAGGTGGAAAGAAGACTCATATTTCTGGGATAATGAGATTAGATTCTTATGTAAATGAATTGGGTCCTTCTGGTTTACCAACACTAATGGATTCCTCTTCTCCTCAAATTGTCAATACTAAGCCGTTGGCCGAATCGGCCTACGTGCCCTGCTTCTCCAACTCAATGAATGTTCAAAGAAACCAAGGAGGGATGGTTGATAATTGCTTCAACAACCCTCTTACTATGGTTTCTTCAAATCCTTCCGTGACTCTTCCAAGGGTTCGGCTATCCAGTTCATTTTATTCTACTACTCAAAGCAACCCATTCCCAGAAAGCTTTTCAGTATCTGGTTCTGTTTATGATGTGCAAGACGACTCATTTCTCAGGACTTTCCTTCAGAACCATGGAACCAACATGAGGAATTTGAAAACAGAAAGGGATATGGCAAGTCTCTCTCAAGAAACAGGCCTGACAACAACAGCTGATATGAACGCTGAAATCTCTTCAATGGTATCAAATGTTGTAATGGGTAGGAGGCCATTTGCTCAGGAGGCACAGCCTATTTCAACTGCAACAATAGAACTTGACACAGAGACATGGTGGAACTGTTGA	1122	0.418	MTTDFSQKMENILSLCYKEDEPMDLPPGFRFHPTDEELISHYLHPKVININFACKAIGFVDLNKSEPWDLPWKANMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKGTSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLDGKLSVHNLPKTAKNEWVISRVFQKTIGGKKTHISGIMRLDSYVNELGPSGLPTLMDSSSPQIVNTKPLAESAYVPCFSNSMNVQRNQGGMVDNCFNNPLTMVSSNPSVTLPRVRLSSSFYSTTQSNPFPESFSVSGSVYDVQDDSFLRTFLQNHGTNMRNLKTERDMASLSQETGLTTTADMNAEISSMVSNVVMGRRPFAQEAQPISTATIELDTETWWNC*	374

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte11g01140	373	ProSiteProfiles	NAC domain profile.	25	175	IPR003441	GO:0003677\|GO:0006355
Pte11g01140	373	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	24	274	-	-
Pte11g01140	373	Gene3D	NAC domain	34	178	IPR036093	GO:0003677\|GO:0006355
Pte11g01140	373	SUPERFAMILY	NAC domain	22	175	IPR036093	GO:0003677\|GO:0006355
Pte11g01140	373	FunFam	NAC domain-containing protein 100-like	34	179	-	-
Pte11g01140	373	Pfam	No apical meristem (NAM) protein	26	150	IPR003441	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g01140	Pte-Chr11	29157920	29159753	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g01140	23	372	NAC Transcription Factor Family	AT5G07680	55.807	1.53e-123	357

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Pte11g01140		NAM	1.3e-38	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g01140	-		-	tcc:18604731	497.278

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