Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01131 ATGAGGGGAAGAAGTTATACTCCATCACCGCCTAGAGGTTACGGAAGAAGAGGACGGAGTCCGAGCCCTAGAGGTCGATACGGTGGTGGTCGTGGTCGAGATCTCCCTACTAGTCTTCTTGTTCGCAACCTTCGCCATGATATTAGACCAGAAGACCTACGTAGGCCGTTTGGCCAATTTGGTCCTCTGAAGGACATCTACTTGCCGAAGGATTACTATACTGGGGAACCTCGTGGATTTGGTTTTGTTCAGTATGTAGATCCTGCTGATGCTGCTGAGGCCAAGTATCAGATGGATGGTCAGATTCTTCATGGACGGGAGTTGACTGTTGTTTTTGCAGAGGAGAATAGGAAAAAGCCAACTGAGATGAGGGCAAGGGAGCGAAGAGGCCCATCTTATGACAGAAGGAGATCTCCTCCTCGCTATTCTCGTTCACCTCGTCCCTCCCGTCTATCTCGGTCTCCACCTCGTCATAGGTCTCACTCAAGGAGCCATGATTATTATTCATCAGCAGCCAAACGAAGGCCACATTCAAGATCTGTTTCTCCCCAAGAGAGAAGGTACAGTCGAGAAAGGTCATACTCACCGCAGGCTCGAGAAAGGTCTTACTCTCGCTCTCCACCCTACAATGGATCAAGAAGCCGCAGTCAAAGTCCAATTAAGGCCCCTCCCATAAGCAGAAGCCCCAGCCCTCGGCACGTTGATTACTCCAGGGAGGCTGCCCGCAGTAGGTCTCGTAGTCAGTGA 747 0.51 MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDIRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAAEAKYQMDGQILHGRELTVVFAEENRKKPTEMRARERRGPSYDRRRSPPRYSRSPRPSRLSRSPPRHRSHSRSHDYYSSAAKRRPHSRSVSPQERRYSRERSYSPQARERSYSRSPPYNGSRSRSQSPIKAPPISRSPSPRHVDYSREAARSRSRSQ* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01131 248 MobiDBLite consensus disorder prediction 232 248 - -
Pte11g01131 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Pte11g01131 248 MobiDBLite consensus disorder prediction 1 36 - -
Pte11g01131 248 SUPERFAMILY RNA-binding domain, RBD 37 142 IPR035979 GO:0003676
Pte11g01131 248 MobiDBLite consensus disorder prediction 199 223 - -
Pte11g01131 248 SMART rrm1_1 38 111 IPR000504 GO:0003723
Pte11g01131 248 MobiDBLite consensus disorder prediction 114 141 - -
Pte11g01131 248 MobiDBLite consensus disorder prediction 114 248 - -
Pte11g01131 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Pte11g01131 248 MobiDBLite consensus disorder prediction 161 198 - -
Pte11g01131 248 Gene3D - 32 217 IPR012677 -
Pte11g01131 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 36 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01131 Pte-Chr11 29000835 29004000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01131 37 149 Eukaryotic Initiation Factors Gene Family AT4G34110 29.565 3.06e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01131 K12900 - vvi:100263951 266.544