LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g01122	ATGAATCGAGCATCATGGGCAGATCTGGCTGCTAATTCAGTGGCCGATAACTCAGGTACTGGTTCTTCTGCCAACAATGGGAGTGCAGGGAAAGCTCCTGCACGGCCTGCTTATGTGCCGCCACACCTTAGAAACCGTCCAACAACTGCAGAGACTGGCCCAGTTCCATCATATAGTGGGGGTGGTCCTCCTTCTGGGACGGGGAATACTGGATTACGTTGGCCAGGCCCCAGACATGAGTATAGATCAGGTTATGGTGGTGGTGGGGGACGTGCTGGTGGATGGGGAAGCAGAACAGGTGGTTGGGACCGAGGTAGAGAGCGGGAAGTGAATCCTTTTGGCGATGATGACATTACTGAGCAAGCATTCGTGGAGCAGGAGAGTAGTGGAATCAATTTTGATGCATACGAAGACATTCCAGTTGAAACCAATGGGGATAATGTGCCACCACCCGTGAATACATTTGCTGAAATTGATCTAGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTAAAGCCAACACCTGTACAGCGGCATACCATTCCCATTTCTCTTGCTGGGCGGGATTTGATGGCTTGTGCTCAGACTGGCTCTGGAAAGACTGCTGCTTTCTGCTTTCCTATAATAAGTGGAATCATGAGAGGTGAACCTGTAATGAGACCTCCTCGTGGGGCACGCATTGTGTACCCTTTGGCTCTAATTCTCTCACCAACCAGGGAGTTGTCAATGCAAATTCATGAAGAAGCTAGAAAATTTTCATACCAGACAGGAGTTAGGGTAGTTGTTGCTTATGGTGGAGCAGCGATACAACATCAGTTGCGGGAGCTTGAGAGAGGTGTTGATATCCTTGTTGCAACGCCTGGAAGGTTAGTAGATTTACTGGAGAGAGCAAAAGTTTCATTACAGATGATTAGGTATTTGGCCCTTGATGAGGCGGATAGGATGCTGGATATGGGTTTTGAGCCTCAGATAAGGAAGATTGTGGAGCAATGTGACATGCCTCCTCCAGGTATGAGACAGACCATGCTATTCAGTGCCACTTTTCCGAGGGAAATACAGAGATTAGCCTCTGATTTTCTTTCCAACTATATATTTTTGGCTGTTGGACGAGTGGGCTCAAGTACTGATCTAATTGTACAAAGGGTTGAGTTTGTTCACGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAAAAGGCAAATGGTGTACAGGGAAAGCAAGCTCTGACATTGGTTTTTGTCGAGACGAAGAAGGGAGCTGATTCACTGGAGCATTTTTTATGTCTTAATGGCTTTCCTGCCACTACAATTCACGGTGACAGAAGCCAACAGGAAAGAGAACTAGCACTGAGGTCATTCAAAAGTGGCAATACACCTATATTGGTGGCAACTGATGTGGCTGCTCGTGGTCTTGACATTCCACATGTCGCTCATGTTGTTAATTTTGATCTGCCTAATGATATTGATGACTATGTGCATCGTATTGGAAGGACGGGACGAGCTGGAAAAACTGGTCTAGCTACTGCATTTTTCAATGAGAATAATGCCTCACTTGCGAGACCTTTGGCAGATCTTATGCAAGAGGCAAATCAAGAAGTACCTGCTTGGCTTTCTCGCTATGCAGCGCGATCTTCTTTTGGAGGAAGAAACAAACGGTCAGGTGGGGGCCGATTCGGTGGCCGTGACTTTCGGAGGGAGAGCTCCTTCAACAGGGGTGGATCTGATTATTATGGTGCAGGCAATAACAGCAGCGGTTATGTCACTTCTGGTGGATACAGTGGAGGGTATGGTCCTGGAGTGACCAGTGCCTGGGATTGA	1836	0.4722	MNRASWADLAANSVADNSGTGSSANNGSAGKAPARPAYVPPHLRNRPTTAETGPVPSYSGGGPPSGTGNTGLRWPGPRHEYRSGYGGGGGRAGGWGSRTGGWDRGREREVNPFGDDDITEQAFVEQESSGINFDAYEDIPVETNGDNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGEPVMRPPRGARIVYPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAAIQHQLRELERGVDILVATPGRLVDLLERAKVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQCDMPPPGMRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQKANGVQGKQALTLVFVETKKGADSLEHFLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNASLARPLADLMQEANQEVPAWLSRYAARSSFGGRNKRSGGGRFGGRDFRRESSFNRGGSDYYGAGNNSSGYVTSGGYSGGYGPGVTSAWD*	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g01122	611	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	153	181	IPR014014	GO:0003724
	Pte11g01122	611	MobiDBLite	consensus disorder prediction	13	29	-	-
	Pte11g01122	611	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	126	547	-	-
	Pte11g01122	611	SMART	ultradead3	172	384	IPR014001	-
	Pte11g01122	611	FunFam	Probable ATP-dependent RNA helicase DDX4	116	371	-	-
	Pte11g01122	611	CDD	DEADc_DDX3_DDX4	154	375	IPR044763	GO:0003724\|GO:0005524
	Pte11g01122	611	FunFam	ATP-dependent RNA helicase RhlB	372	551	-	-
	Pte11g01122	611	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	184	369	IPR014001	-
	Pte11g01122	611	Pfam	Helicase conserved C-terminal domain	393	508	IPR001650	-
	Pte11g01122	611	Gene3D	-	372	551	IPR027417	-
	Pte11g01122	611	Gene3D	-	111	371	IPR027417	-
	Pte11g01122	611	MobiDBLite	consensus disorder prediction	13	107	-	-
	Pte11g01122	611	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	380	547	IPR001650	-
	Pte11g01122	611	CDD	SF2_C_DEAD	381	517	-	-
	Pte11g01122	611	SMART	helicmild6	427	508	IPR001650	-
	Pte11g01122	611	Pfam	DEAD/DEAH box helicase	177	358	IPR011545	GO:0003676\|GO:0005524
	Pte11g01122	611	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	234	523	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g01122	Pte-Chr11	28866028	28869569	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g01122	151	540	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.964	1.29e-59	202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g01122	K11594		-	qsa:O6P43_003817	957.207