Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01102 ATGGCTGAGAGAAATACCTCGGCGGTTGCCAATCCGGCGTGGGTTAAGCAATCTCAGGAGGCAAAACTTAAGACTGAGGCTGAGAAAGCTGCGGCAGCAAAAGCTGCATTTGAAGCTACATTCAAAGCTGTTGACAAAACTCGCGAGAAACAAACTCTCGTATCAGACAGTGATTCTGAGGAGACCGAGGACTTGGAGAACAACCCTATTGGACATGTGGACCCTTTCAAGAGCACAGCCGCCGGTAGTGGGATCGGCGGTGGGACAGCCTGTACACCAACTACATTTGTTGTGGTGACTAAGGATGCTGATGGGAGAAAGGTGCCCTACGGGGGTGCACAAATCAAGGCAAAGGTGTCGCCAGGTACAGGCGTTGGGGGGTCTGATCAAGAAGGGATTGTGAAGGATATGGGTGATGGAACTTACACTGTGACTTATGCAGTACAAAAGAGAGGGAATTACATGGTGAATGTTGAATGCAATGGAAAGCCAATTATGGGAAGTCCATTCCCCGTGTTCTTCAGTGCAGGTGCTAGTACTGGGGGGTTGCTGGGCTTGGCTCCTCCATCCACATTCCCAAATATAGCTAACCAAACCATGCCAAACATGACCAACTATTCGGGTTCTGTAACTGGGGCATTCCCAGGGTTCGTTGGAATGATTCCTGGTTCTGTTTCTGGATCTTCTGGTGGGATTATTCTACCTGGAATTGGAGCTTCTTTTGGGGAGATCTGTCGAGATTATCTCAATGGCTTATGTTCAAAAACTGATTGTAAGTTAACTCACCCACCACAGAATTTGCTTATGGCTGCTGTGACAGCGACTAATTCCATGGGGACGCTTAGTCAAGCCCCAATGGCTCCTTCTGCGGCAGCCATGGCTGCTGCTCAGGCAATTGTTGCTCTTCAAGCTTGGAATGCCCATACTGCACAGGCCCAATCGCAAACTCAATCAGCGAAGGACTCTTCTGGGTCATCTGAAAAAGCTTTGAAGATCGAATTGTTGAAGAAAACGCTTCAAGTTAGCAATCTCAGTCCACTACTTACAGTGGAACAACTGAAGCAATTGTTTAGTCTTTATGGAACAATTAGAGAGTGTTTCATAACTGATTCAAAGCATTCTGCTTATATAGAATACTCAAAGCCTGAAGAGGCCACTGCTGCTTTGGCATTGAATAACATGGATATTGGAGGGCGCCCTCTGAATGTTGAAATGGCAAAATCAATTCCTCAGAGACTTTTGAGTTCATCTTTGGCATCATCTTCTAGTCCTTCTATGGTGGAGCAACATACTATTGTTATGCAGCAACAGTTCCAGCAGGCATTACTCATGCAACAAACTATGATAACACAAATGGCAGCCAACAAGGCTGCTGCTGCAAAATCAAAAGCAGATCTGGCTGCAGCCAGAGCAGCAGAAATAAGTAAGAAATTAAGCGCTGATGGAGTTGGGAATGAAGAGAAAGAAACAAAAAACAAGTCTAGATCCCCTAGTCCTTCAAACGAAGGATCGAGATTGAAGTCAAAATCACCTAGAAATTATAGGAGGCGGCAACGGTCTCAGTCTTACTCACCTCGTCCTCGTCATACAATGGATCATAGATCTAGATCACCATTGAGATATCACTATTCCAGATATGAAAATGAGAGATCATATCGGGACAGGGATCATAGAGAAAAAGGCAGAAGGGGTTCAGATAGATCAAATAATCATCATTCATCTGTTTCTCGGCGAAATAGGAGTAGGAGTGTGAGCCCTTCTAGAAGAAAATATCGAGATGATTCCTTGTCTCCAAGGTACCGAGAAAGTCAGCCACACAGAATAAAGAAATCATCTCATACTCGTTCCAAATCACCTAGTCATCACAAGAGAAATAGACATTCCCCAAGAAATGATGATGAATGTAAAGAGAGATGCCAAAGACGTTCAAGGTCAAAATCTATTGAAGATAAGGTCTCTGATAAGAGAGATGGAAGTTCCGAGAGGAAGTTAAAGCACAAGGAGAGAAGGCAATCCAGGTCATTATCAGCAGAAGACAAGCTTTACAGAAGCACTCACTCAACACTGAGAAGCAAAAAAAATTATAGTAGATCCAAACATAGAAGGGGGTCCAGGTCAAGATCCTCGGAGGGGAAGCACCTGCTCACTGATAAGCTAGATGAGTCCAGACAGTTAAAATGTCGTGAAAAACGATCAAGATCAAAGTCAGAGGAACAGGACCGACAATTGGATGAAGGAACAGAGAAAAGTAGAGACAAAAGATCAAAGCATCATCATAGAAGAAGATCCAGGTCAAAATCAGTGGAGGCTAAGCCTCACCGAAAAGAGAAAGAAGGTAGGGATGCTAAATATAAGAAGTCAGAGAAACTTGATACTAAGCATTCCTCATTGATATCTTCAGAAGCAAAGAACCACATAGGAAGCACTTCCCCAATTGAGAATTCGAATGATGCTCCTGGTACAAAGTCTACTGACAAAAAGCATTTCTCTAATGGTGGAGATAAAAAATTACAGCGTCATGTAGATACTAGGTTGACGCCGATGTATGAAGAATTGGAAGACTAA 2565 0.4382 MAERNTSAVANPAWVKQSQEAKLKTEAEKAAAAKAAFEATFKAVDKTREKQTLVSDSDSEETEDLENNPIGHVDPFKSTAAGSGIGGGTACTPTTFVVVTKDADGRKVPYGGAQIKAKVSPGTGVGGSDQEGIVKDMGDGTYTVTYAVQKRGNYMVNVECNGKPIMGSPFPVFFSAGASTGGLLGLAPPSTFPNIANQTMPNMTNYSGSVTGAFPGFVGMIPGSVSGSSGGIILPGIGASFGEICRDYLNGLCSKTDCKLTHPPQNLLMAAVTATNSMGTLSQAPMAPSAAAMAAAQAIVALQAWNAHTAQAQSQTQSAKDSSGSSEKALKIELLKKTLQVSNLSPLLTVEQLKQLFSLYGTIRECFITDSKHSAYIEYSKPEEATAALALNNMDIGGRPLNVEMAKSIPQRLLSSSLASSSSPSMVEQHTIVMQQQFQQALLMQQTMITQMAANKAAAAKSKADLAAARAAEISKKLSADGVGNEEKETKNKSRSPSPSNEGSRLKSKSPRNYRRRQRSQSYSPRPRHTMDHRSRSPLRYHYSRYENERSYRDRDHREKGRRGSDRSNNHHSSVSRRNRSRSVSPSRRKYRDDSLSPRYRESQPHRIKKSSHTRSKSPSHHKRNRHSPRNDDECKERCQRRSRSKSIEDKVSDKRDGSSERKLKHKERRQSRSLSAEDKLYRSTHSTLRSKKNYSRSKHRRGSRSRSSEGKHLLTDKLDESRQLKCREKRSRSKSEEQDRQLDEGTEKSRDKRSKHHHRRRSRSKSVEAKPHRKEKEGRDAKYKKSEKLDTKHSSLISSEAKNHIGSTSPIENSNDAPGTKSTDKKHFSNGGDKKLQRHVDTRLTPMYEELED* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01102 854 Gene3D - 297 414 IPR012677 -
Pte11g01102 854 MobiDBLite consensus disorder prediction 610 625 - -
Pte11g01102 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 408 IPR000504 GO:0003723
Pte11g01102 854 MobiDBLite consensus disorder prediction 479 854 - -
Pte11g01102 854 SMART flmn_3 74 177 IPR001298 GO:0005515
Pte11g01102 854 MobiDBLite consensus disorder prediction 799 819 - -
Pte11g01102 854 MobiDBLite consensus disorder prediction 526 573 - -
Pte11g01102 854 ProSiteProfiles Filamin/ABP280 repeat profile. 70 174 IPR017868 -
Pte11g01102 854 ProSiteProfiles Zinc finger C3H1-type profile. 244 265 IPR000571 GO:0046872
Pte11g01102 854 MobiDBLite consensus disorder prediction 626 686 - -
Pte11g01102 854 SUPERFAMILY RNA-binding domain, RBD 313 412 IPR035979 GO:0003676
Pte11g01102 854 Pfam Filamin/ABP280 repeat 73 170 IPR017868 -
Pte11g01102 854 MobiDBLite consensus disorder prediction 708 752 - -
Pte11g01102 854 MobiDBLite consensus disorder prediction 820 854 - -
Pte11g01102 854 MobiDBLite consensus disorder prediction 480 495 - -
Pte11g01102 854 SMART rrm1_1 338 404 IPR000504 GO:0003723
Pte11g01102 854 MobiDBLite consensus disorder prediction 753 768 - -
Pte11g01102 854 MobiDBLite consensus disorder prediction 769 798 - -
Pte11g01102 854 MobiDBLite consensus disorder prediction 690 707 - -
Pte11g01102 854 Gene3D Immunoglobulins 72 179 IPR013783 -
Pte11g01102 854 MobiDBLite consensus disorder prediction 586 609 - -
Pte11g01102 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 401 IPR000504 GO:0003723
Pte11g01102 854 MobiDBLite consensus disorder prediction 47 76 - -
Pte11g01102 854 SUPERFAMILY E set domains 72 172 IPR014756 -
Pte11g01102 854 CDD RRM_SF 339 404 - -
Pte11g01102 854 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 278 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01102 Pte-Chr11 28528178 28535746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01102 295 407 Eukaryotic Initiation Factors Gene Family AT2G23350 32.558 1.23e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01102 - - qlo:115950575 838.565