Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01098 ATGGCATTTTGCTATAGAATTGGAAACCTCTTGAAGCAGGGTGCTGCTCACAACAGTCAAGCACCGTCAGCTATCTTTAATTCCATTCGCTGCATGTCTACAAGTTCAACCAAGCTTTTTGTTGGAGGTCTTTCATGGGGAGTTAATGACACTTCTCTAAAAGATGCATTTTCTAGCTTTGGAGATGTTGTTGAAGCAAGAGTTATTCTCAACCGGGACACTGGAAGATCTAAAGGATTTGGATTTGTCAACTATTCTAGTGGTGAATCAGCAAGTGATGCACTAGCTGCAATGGATGGCCAGGAACTAGACGGCCGCAATATCCGCGTGAGTTTTGCGACAGACAAACCTCCTACTGCCCGGGGTTTTGGTGGTGGCTTCCGCGGGAATGGAGATTTTGGGAACCCAAGCTTTTAG 417 0.4556 MAFCYRIGNLLKQGAAHNSQAPSAIFNSIRCMSTSSTKLFVGGLSWGVNDTSLKDAFSSFGDVVEARVILNRDTGRSKGFGFVNYSSGESASDALAAMDGQELDGRNIRVSFATDKPPTARGFGGGFRGNGDFGNPSF* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01098 138 Gene3D - 14 136 IPR012677 -
Pte11g01098 138 CDD RRM2_NsCP33_like 38 113 - -
Pte11g01098 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 10 129 - -
Pte11g01098 138 SMART rrm1_1 38 111 IPR000504 GO:0003723
Pte11g01098 138 SUPERFAMILY RNA-binding domain, RBD 33 135 IPR035979 GO:0003676
Pte11g01098 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Pte11g01098 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01098 Pte-Chr11 28483032 28487322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01098 9 120 C2H2 Transcription Factor Family AT2G19380 33.036 3.00e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01098 - - qsa:O6P43_023573 172.17