Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01097 ATGGCTTTTGCTGATTTCGCACTTTCTGATTTTGCATTCACTGTCCACAATGAGCTACTTATAAATACCGACAACTCTGCTAAAACTGTCGTTATGTACCGACTGTCACGTTCAACCATCGCAAGAGTTATTCTCAACCGGGACACTGGAAGATCTAAAGGATTTGGATTTGTCAACTATTCTAGTGGTGAATCAGCAAGTGATGCACTAGCTGCAATGGATGGCCAGGAACTAGACGGCCGCAATATCCGCGTGAGTTTTGCGACAGACAAACCTCCTACTGCCCGGGGTTTTGGTGGTGGCTTCCGCGGGAATGGAGATTTTGGGAACCCAAGCTTTTAG 342 0.4649 MAFADFALSDFAFTVHNELLINTDNSAKTVVMYRLSRSTIARVILNRDTGRSKGFGFVNYSSGESASDALAAMDGQELDGRNIRVSFATDKPPTARGFGGGFRGNGDFGNPSF* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01097 113 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 41 104 - -
Pte11g01097 113 Gene3D - 29 112 IPR012677 -
Pte11g01097 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 90 IPR000504 GO:0003723
Pte11g01097 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 84 IPR000504 GO:0003723
Pte11g01097 113 SUPERFAMILY RNA-binding domain, RBD 41 110 IPR035979 GO:0003676
Pte11g01097 113 MobiDBLite consensus disorder prediction 91 113 - -
Pte11g01097 113 SMART rrm1_1 18 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01097 Pte-Chr11 28476365 28479683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01097 8 107 Eukaryotic Initiation Factors Gene Family AT1G49760 32.673 1.25e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01097 - K12741 jre:109008441 94.7449