LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g01091	ATGGTCGGAGCTTCAGGAAGTGGTGATGGGGGCGGCGGCATTGGAGGTCTCCCACCTTTTCTTTTGAAAACGTATGAAATGGTCGATGACACTTCTACCGATGATATCGTCTCTTGGAGTTACAGTAAGAAGAGCTTTGTGGTCTGGAACCCGCCAGAGTTCTCAAGGCTTCTTCTTCCCACTTACTTCAAGCACAACAACTTCTCCAGCTTCATCAGACAACTCAACACCTATGGATTCAGAAAAGTAGACCCTGAACGTTGGGAATTTGCCAATGAAGATTTTGTGAAAGGTCAAAAGAACAGTCTTAAGAACATTTATCGCAGGAAACCTATCCATAGTCACAGTCACCCTCCAGGTTCCCTTGTTGATGCTGAAAGAGCTGCGCTCGATGAAAAAATAGATAGGCTTTCCCGTGAAAGAGCTGGACTTCGGTCCCATATCTTTAGGATCAAACAGCAGAAATCGGCTTTAAAGCTTCAATACGAAGACCTAAGTAAGAGGATTGATGGAGTGGAGAAGAGACAAGAGGATTTGTTGAACTTTTTTGACAAGGCTCTTCAGAAACCTACTGTCGTTGAATATCTTCTGCAGAAAATTCAGTCTATGGACTTGTCAGCATATAACAAAAAAAGGCGACTGCCTGAGACTGGCCAGTCGCTTCCAGTTTCTGAGAATGATTTTATAGACTTTTGCAGCAACAGTAGACCTGAATTTGGAAATATCGTCCACCTCAATTTTTCTGATAAACTCAGACTCGAATTATCACCAGCTATTTCAGATAAGAACTTGGTGTCACTTAGCACACAAAGTTCAAATGGAAGTAGGAGAAGTGCGGAGAAGATCATATCTGAAGAACACAAAGTAATGCAGACAACCCCAGAGACTCTGGTATTTTCACCCCAAAGCTTAGACCCTTCAGATGATGGATTATCTTTCACATTTAAAATGAGTTCACCTTCATCACAAATACCAGTAATTCAAGATAGCACAAGACAGCATTCTTTGCAACCGAGTTTAAGTTCAACTGATGAAGGCGATGTTCAGCTATCCTACCATTTGAATCTTACTCTGGCATCTTGTCCTTCTTATATGGATGAGAATTATTTAACTAAGTTTCTTCAAACAGGTAATCAGGAAATGAGAAATTTCTCAGATCCAAAGTTTCATGGCAATGGTAAAGAATCTGGTAATAAAGTATCTTCAAGCCAAAACCCGATCATGGAGGTATCATCGAGAGGATTGCAACATAATAGTCAAGATCAAGCTCCAGTTAGAGTGAATGACTTATTCTGGGAACAATTCCTTACAGAAAGATCTGGATACACAGATAACGAAGAAGCACATTCCAACAAGGCAAACAAATTGACCAAGGAGAGGATGGAAGGTTCAGTCATGTCATTTCTAAAGATATAA	1416	0.4068	MVGASGSGDGGGGIGGLPPFLLKTYEMVDDTSTDDIVSWSYSKKSFVVWNPPEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKVDPERWEFANEDFVKGQKNSLKNIYRRKPIHSHSHPPGSLVDAERAALDEKIDRLSRERAGLRSHIFRIKQQKSALKLQYEDLSKRIDGVEKRQEDLLNFFDKALQKPTVVEYLLQKIQSMDLSAYNKKRRLPETGQSLPVSENDFIDFCSNSRPEFGNIVHLNFSDKLRLELSPAISDKNLVSLSTQSSNGSRRSAEKIISEEHKVMQTTPETLVFSPQSLDPSDDGLSFTFKMSSPSSQIPVIQDSTRQHSLQPSLSSTDEGDVQLSYHLNLTLASCPSYMDENYLTKFLQTGNQEMRNFSDPKFHGNGKESGNKVSSSQNPIMEVSSRGLQHNSQDQAPVRVNDLFWEQFLTERSGYTDNEEAHSNKANKLTKERMEGSVMSFLKI*	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g01091	471	Coils	Coil	127	147	-	-
	Pte11g01091	471	SMART	hsfneu3	16	109	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte11g01091	471	Coils	Coil	155	175	-	-
	Pte11g01091	471	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	16	332	IPR027725	-
	Pte11g01091	471	PRINTS	Heat shock factor (HSF) domain signature	20	43	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte11g01091	471	PRINTS	Heat shock factor (HSF) domain signature	71	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte11g01091	471	PRINTS	Heat shock factor (HSF) domain signature	58	70	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte11g01091	471	ProSitePatterns	HSF-type DNA-binding domain signature.	59	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte11g01091	471	SUPERFAMILY	"Winged helix" DNA-binding domain	17	109	IPR036390	-
	Pte11g01091	471	FunFam	Heat shock transcription factor 1	14	110	-	-
	Pte11g01091	471	Gene3D	-	15	110	IPR036388	-
	Pte11g01091	471	MobiDBLite	consensus disorder prediction	381	405	-	-
	Pte11g01091	471	Pfam	HSF-type DNA-binding	20	109	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g01091	Pte-Chr11	28415797	28419426	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g01091	20	466	HSF	AT4G13980	50.661	2.23e-137	402

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pte11g01091		HSF_DNA-bind	2.8e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g01091	K09419		-	qsa:O6P43_002600	528.48