Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01089 ATGGACTCTTCTTCTTCGGCTTCAGCATCTTCTCCTAACTCTCAGCCCCATAACTGGCTTGCTTTCTCTCTCTCTAATCACTTCCCTTCTTCAGCCTCACCCCCACACCTACAACCCGATCTGTCTCTCTTTCACTCTTTTCCTTCCTCAGGTGGTGCACAAGAGGTTGTAGAGGCTACTACAACCACCACTGCGACCACTGCAACTCTTGGTGGTGCAACCGACCTGTCAATGTTTACCAGTGTACCCAAACTGGAGGATTTTCTTGGCGGCTCTACAACATCAACAACCACGACTCCAGCTGCTGCTCCGCCGCTCTCTCACTTACCCACCGATTCTACTCTCACTTTGTCGGACGCCGACATATACGGTTCTGAGCTCAAAACCTTAGCCGCTAGCTTTCTTCGCGGTTATGTTTCAACCGAACAATCTCCAACACAAAAACCATTACAATTACAATTGCCATCACTGTCAGCAACTGCGGCAACTCCACCTGGCCTTCCTCTTAGAAAAACCGCTGATACTTTTGGCCAACGCACTTCCATTTACCGCGGCGTGACTCGGCATAGGTGGACAGGTAGATACGAAGCACATCTTTGGGATAACAGCTGTAGGAGAGAAGGGCAAAGTAGAAAAGGAAGACAAGGTGGTTATGACAAGGAAGACAAGGCCGCTAGAGCATATGATCTTGCAGCTCTTAAGTACTGGGGTCCGACCACCACTACCAACTTTTCTATTTCAAACTATGAAAGGGAGTTGGATGAGATGAAGAACATGACAAGGCAAGAATTTGTTGCTTCTCTAAGAAGGAAAAGTAGTGGCTTTTCTAGAGGAGCATCCATATACAGAGGGGTGACAAGGCATCATCAACATGGTCGCTGGCAAGCAAGAATAGGAAGAGTTGCCGGTAACAAAGATCTTTACCTTGGCACATTCAGTTCCCAAGAAGAAGCTGCTGAGGCCTATGATATTGCTGCCATCAAGTTCAGAGGACTAAATGCTGTGACCAACTTTGACATTAGTCGCTATGATGTAAAAAGCATTGCAAACAGTAACCTTCCAATTGGCGGTTTGTCAAACAAATCCAAAAATCATTCAGAGTCTGACTGCAAGAGTCAGGAAGGCAGTGAATCAGATGAGACGAGAGATCTGTCTTCTTCCTCCGTTTCCTTTGCTTCCCACCCTTTACGTTCTACTCTCAGCTTTGCTTTACCCATCAAACAAGATCCTTCAGATTACTGGTCCGTTCTTGGATACCTAAACCAAAACCCTTCTGTCAATAATGCAAAGAGCTATACCAGTGTTGCACAAACTCTCTTACAGTCTTCAAGTTCCAATGTGTCATTACTACCCAGCTCCATCACCACACCTTTCAACATTGAGTACTCAGTTGGCAGTGAAAACAACAGCGATAACAATGGATATCTCAACAATGGAGGCATGTTTTCTCAGCAACAACATACAAGCAGTAGTACTGCAAGGCCTAACTTTGCCACACCTATTACTACTTTAAGCAGTAATAATGGTTATGAGGGGTCTTCAAGTTACGGAAATTGGATAGGTCCAAGCTTCCACACATTCCAACCCCATGCAAAACCTAGTCTCTTTCAAACACCAATTTTTGGCATGGAGTGA 1635 0.4544 MDSSSSASASSPNSQPHNWLAFSLSNHFPSSASPPHLQPDLSLFHSFPSSGGAQEVVEATTTTTATTATLGGATDLSMFTSVPKLEDFLGGSTTSTTTTPAAAPPLSHLPTDSTLTLSDADIYGSELKTLAASFLRGYVSTEQSPTQKPLQLQLPSLSATAATPPGLPLRKTADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFSISNYERELDEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSSQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIANSNLPIGGLSNKSKNHSESDCKSQEGSESDETRDLSSSSVSFASHPLRSTLSFALPIKQDPSDYWSVLGYLNQNPSVNNAKSYTSVAQTLLQSSSSNVSLLPSSITTPFNIEYSVGSENNSDNNGYLNNGGMFSQQQHTSSSTARPNFATPITTLSSNNGYEGSSSYGNWIGPSFHTFQPHAKPSLFQTPIFGME* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01089 544 Gene3D AP2/ERF domain 281 341 IPR036955 GO:0003700|GO:0006355
Pte11g01089 544 Gene3D AP2/ERF domain 182 247 IPR036955 GO:0003700|GO:0006355
Pte11g01089 544 MobiDBLite consensus disorder prediction 364 381 - -
Pte11g01089 544 SUPERFAMILY DNA-binding domain 280 341 IPR016177 GO:0003677
Pte11g01089 544 ProSiteProfiles AP2/ERF domain profile. 182 245 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 CDD AP2 280 341 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 SMART rav1_2 182 251 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 SMART rav1_2 281 345 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 CDD AP2 181 247 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 SUPERFAMILY DNA-binding domain 181 247 IPR016177 GO:0003677
Pte11g01089 544 PRINTS Ethylene responsive element binding protein signature 183 194 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 PRINTS Ethylene responsive element binding protein signature 321 341 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 Pfam AP2 domain 281 331 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 Pfam AP2 domain 182 237 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 ProSiteProfiles AP2/ERF domain profile. 281 339 IPR001471 GO:0003700|GO:0006355
Pte11g01089 544 MobiDBLite consensus disorder prediction 354 386 - -
Pte11g01089 544 FunFam AP2-like ethylene-responsive transcription factor 280 341 - -
Pte11g01089 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 434 - -
Pte11g01089 544 FunFam AP2-like ethylene-responsive transcription factor ANT 181 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01089 Pte-Chr11 28346557 28349678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01089 89 424 AP2-EREBP Transcription Factor Family AT5G57390 64.058 5.77e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pte11g01089 AP2 6.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01089 K09285 - qsu:112025300 610.527