Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01074 ATGAACTTCAGACCAGGTACTATTTCCGCTAATTTGAACCTTTCGGCTGAGAATCAGCTTAACTTGGATCTTGCTCTTGAACCGTCACCTTCTTCTTGTTCATCCTCAACATCACCTACCAATCCTTGTGACCTGCAAAGGATGTTCCCATGCAACTACTGCCAAAAAAAGTTTTACAGCTCACAAGCATTAGGGGGTCACCAGAATGCGCACAAGCTTGAGCGGTCGCTGGCCAAGAAAAGTAGAGAGCTATATTCTGCCATACAAGTTCACGGGGGTTTAACCAATGATTTAATAACAAGCGGCAATCCTCCGGGGCGTGTTCGGTCGCTTCCACCAGGACGGAATGAATACGAAGGAGAATGGAGTGGTGTGATTCGTTTTGGAAGGAGAGATACTGGTAGTGCAGTGAGTAAAGAAGGAGCTACTGCCTGGCGTAGGGGATATGCATCTGAAAATCACGAAGAAGAAGGCAGCACTAGTCATCTTGACTTGTCCTTGAGGCTTTAA 510 0.4647 MNFRPGTISANLNLSAENQLNLDLALEPSPSSCSSSTSPTNPCDLQRMFPCNYCQKKFYSSQALGGHQNAHKLERSLAKKSRELYSAIQVHGGLTNDLITSGNPPGRVRSLPPGRNEYEGEWSGVIRFGRRDTGSAVSKEGATAWRRGYASENHEEEGSTSHLDLSLRL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01074 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Pte11g01074 169 MobiDBLite consensus disorder prediction 148 169 - -
Pte11g01074 169 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 88 IPR044246 GO:0009788
Pte11g01074 169 MobiDBLite consensus disorder prediction 149 169 - -
Pte11g01074 169 SUPERFAMILY beta-beta-alpha zinc fingers 47 76 IPR036236 -
Pte11g01074 169 Gene3D Classic Zinc Finger 33 96 - -
Pte11g01074 169 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Pte11g01074 169 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01074 Pte-Chr11 27629413 27629922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01074 1 170 C2H2 Transcription Factor Family AT5G57520 42.614 4.04e-24 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g01074 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01074 - - qsa:O6P43_022301 139.043