Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte11g01066 | ATGGGTCGAGCTCCATGCTGTGACAAAGCCAATGTTAAGAAGGGACCTTGGTCATCGGAAGAGGATGCAAAGCTCAAAGCTTATATTGAAAAGTATGGAATTGGTGGCAATTGGATTGCTCTTCCTCAAAAAATAGGACTCAAAAGATGTGGAAAGAGTTGCAGACTGAGATGGTTAAATTACTTGAGGCCGAATATTAAGCATGGTGGATTTACTGAAGAAGAAGACAACGTCATCTGCAACCTTTATATAAGCATAGGCAGCAGATGGTCCATTATTGCAGCTCAGCTACCAGGAAGGACAGATAATGACATCAAGAACTACTGGAACACCAGACTGAAGAAGAAACTACTTGGAAGGCGCAAGCTCTCGTCAAACTCCAACAGACTGAGCGACCCAAAAGATATCAACGAAAACGAGGAGAATAATTCATGTTACAATGCCCTAAGTAACTCCGCCCTTGAAAGACTTCAACTACACATGCAACTAAAAAACCTTCATAATCAATTCTCTTTGTACAACAATCCTGCTCTTTGGCCAAAGTTGCATCCTTTTCAAGAAAAGAAGATCCAAGGGGTTCCATATATGATCAATGACACTAATTCTGATCCGTCTCTGACACAAAATATTTTGACTAGCCATACCGCTGTGCAGGAAGATAAGTTTGGCATTTATGGTTCAACTGTGGCAACTGGTAGCCCCCATGGAAACGATGATTTAGGCCTTACTGATCCAAGATTTGAAGGATTAGACAACCCCTTGAAAAATATTGTGTCTGCTCCAGACAGCTCTGCTGTTTATGCTAATGGAAACAATTCTGTGAACTCGAAGTTTGCACCAAGCCATGGCAGTACTGACCAGTCTGACGTGGGAACGCAACAGGTTTATCCACTCCAGGCAGAATTGGATGATATTCTTAACAACAGAACTGGTGATTATATGAGACAAGAAGATCAGATGTCTGAGTTTGATTGTTTCAAACAAATGAATAGCTCGAGGGACAGCATTATGTGGTGGACAAATGATTTTGACACCAAGTCATCATCCTCAAACTCATGGGATTCAACTCCTGTTCTTCATTCACAGCCCTTGTTTCAAGATTATGAGATCAGTTACAATATGTAG | 1125 | 0.4124 | MGRAPCCDKANVKKGPWSSEEDAKLKAYIEKYGIGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNVICNLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKLSSNSNRLSDPKDINENEENNSCYNALSNSALERLQLHMQLKNLHNQFSLYNNPALWPKLHPFQEKKIQGVPYMINDTNSDPSLTQNILTSHTAVQEDKFGIYGSTVATGSPHGNDDLGLTDPRFEGLDNPLKNIVSAPDSSAVYANGNNSVNSKFAPSHGSTDQSDVGTQQVYPLQAELDDILNNRTGDYMRQEDQMSEFDCFKQMNSSRDSIMWWTNDFDTKSSSSNSWDSTPVLHSQPLFQDYEISYNM* | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte11g01066 | 374 | Pfam | Myb-like DNA-binding domain | 14 | 62 | IPR001005 | - | |
| Pte11g01066 | 374 | Pfam | Myb-like DNA-binding domain | 69 | 111 | IPR001005 | - | |
| Pte11g01066 | 374 | CDD | SANT | 71 | 113 | IPR001005 | - | |
| Pte11g01066 | 374 | Gene3D | - | 69 | 147 | - | - | |
| Pte11g01066 | 374 | ProSiteProfiles | Myb-like domain profile. | 63 | 113 | IPR001005 | - | |
| Pte11g01066 | 374 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 62 | IPR017930 | - | |
| Pte11g01066 | 374 | PANTHER | OS09G0431300 PROTEIN | 1 | 362 | - | - | |
| Pte11g01066 | 374 | FunFam | Transcription factor RAX3 | 7 | 68 | - | - | |
| Pte11g01066 | 374 | SMART | sant | 13 | 64 | IPR001005 | - | |
| Pte11g01066 | 374 | SMART | sant | 67 | 115 | IPR001005 | - | |
| Pte11g01066 | 374 | CDD | SANT | 16 | 62 | IPR001005 | - | |
| Pte11g01066 | 374 | SUPERFAMILY | Homeodomain-like | 11 | 109 | IPR009057 | - | |
| Pte11g01066 | 374 | FunFam | Transcription factor MYB36 | 70 | 142 | - | - | |
| Pte11g01066 | 374 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 63 | 117 | IPR017930 | - | |
| Pte11g01066 | 374 | Gene3D | - | 7 | 68 | - | - | |
| Pte11g01066 | 374 | ProSiteProfiles | Myb-like domain profile. | 9 | 62 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte11g01066 | Pte-Chr11 | 27409084 | 27410526 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte11g01066 | 1 | 185 | MYB Transcription Factor Family | AT5G57620 | 77.005 | 1.32e-98 | 294 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Pte11g01066 | Myb_DNA-binding | 2.9e-13 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte11g01066 | K09422 | - | tcc:18589215 | 437.187 |