Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01060 ATGGGTTTTGTAGGATTTTTAAACTCTGTATTTGCTCTTGCGACTCTATTTGCTCTATTGCCAAGCCATTGTTACTGCTTCAACGTCAAGTTGATCAATGTCTCTCAAATTCTAACGCCTGATCAAAAGGAATGGCAAGAGGCTGGAGCAACATGGTATGGAAGCCCTGATGGTGATGGATCAGAAGGGGGTGCTTGTGGATATGGCTCAGCCGTAGGACAGTCCCCATTTTCCAGAATGGTATCAGCTGGAGGTTCTTCTATTTTTGATGGAGGAGAAGGGTGCGGTCTTTGCTACCAGGTAAAATGCACAGGAAATGCACCGTGCTCAGGAAATCCAGTGACGATAGCTATTACCGACAATTGCCCCGACTGTCCATCGATTCATTTTGATCTCAGTGGCACTGCCTTTGGAGCTATGGCACGTCCTGGCCAGTTTGATCGACTACGTAATGAAGGACGTATCGGCATTGAGTACCAAAGAGTGCCTTGCCAGTTTGGTGTATCCATAACATTTCGAGTTGATTCCGGCTCTAACCCATACTACATGGCAACCCTGATCGAATATGAAAATGATGGTGAGATTAAGGTGGTTTCTCTCAAGCAATCTGATAGCACAGACTCATGGATTCCCATGCAGCAGTCCTGGGGAGCAGTTTGGAAACTTGACAGTGGTTCCCCATTGAAAGCACCACTTTCCATCAAGTTGACCAATGATGTGGGTAAGTCTGCTGTAGCAGACAATGTCATTCCAGATGGGTGGCAACCTGGACAAACATACCGATCGGTAGTCAACTTTTGA 801 0.4632 MGFVGFLNSVFALATLFALLPSHCYCFNVKLINVSQILTPDQKEWQEAGATWYGSPDGDGSEGGACGYGSAVGQSPFSRMVSAGGSSIFDGGEGCGLCYQVKCTGNAPCSGNPVTIAITDNCPDCPSIHFDLSGTAFGAMARPGQFDRLRNEGRIGIEYQRVPCQFGVSITFRVDSGSNPYYMATLIEYENDGEIKVVSLKQSDSTDSWIPMQQSWGAVWKLDSGSPLKAPLSIKLTNDVGKSAVADNVIPDGWQPGQTYRSVVNF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01060 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 169 IPR007112 -
Pte11g01060 266 Pfam Lytic transglycolase 82 157 IPR009009 -
Pte11g01060 266 CDD DPBB_EXPB_N 45 164 - -
Pte11g01060 266 SMART dpbb_1 81 159 IPR007112 -
Pte11g01060 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 262 IPR007117 -
Pte11g01060 266 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Pte11g01060 266 PRINTS Major pollen allergen Lol pI signature 218 235 IPR005795 GO:0005576|GO:0019953
Pte11g01060 266 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Pte11g01060 266 PRINTS Major pollen allergen Lol pI signature 103 113 IPR005795 GO:0005576|GO:0019953
Pte11g01060 266 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Pte11g01060 266 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Pte11g01060 266 Gene3D - 29 165 IPR036908 -
Pte11g01060 266 Gene3D - 168 263 IPR036749 -
Pte11g01060 266 PANTHER EXPANSIN-B3 23 266 - -
Pte11g01060 266 SUPERFAMILY Barwin-like endoglucanases 44 188 IPR036908 -
Pte11g01060 266 SUPERFAMILY PHL pollen allergen 168 262 IPR036749 -
Pte11g01060 266 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Pte11g01060 266 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Pte11g01060 266 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Pte11g01060 266 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Pte11g01060 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Pte11g01060 266 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Pte11g01060 266 Pfam Expansin C-terminal domain 170 251 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01060 Pte-Chr11 27028018 27029913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01060 25 267 Expansin Gene Family AT1G65680 58.065 8.15e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01060 - - twl:119983088 338.576