Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01059 ATGGCTAGTACTATTCTTCAACAAGCACTCTCCCTCTGCACTCTTGCCCCTCTCATTTTTCTTATTCTAGTCAACCCTTGTTCTTGCTTAAACATGAGGAAGCTCCTCAATTCCTCATACTCCCCATATGCTTCAGGTTGGACCCAAGCTACTGCTACTTGGTATGGAAGTCCTGATGGAGCTGGAAGTGATGGGGGTGCATGTGGATATGGCGGTGCTGTAGATCAAGCTCCATTCTCTGCAATGATATCCGCCGGAGGTCCTAACTTGTATGATGGAGACAAAGGCTGTGGCGCTTGTTATGAGGTGATGTGCACTGGTAAAGCTAATGCTTTGTGTTCAGGGAACCCAGTGAAAGTAGTTCTCACTGATAACTGCCCCGGTTGTGGTGATGACCATTTTGACTTAAGTGGCACTGCTTTTGGTGCCCTGGCTTCTTCTGGTCAGTCTAGCAGACTTCGTGATGCTGGTATACTGCAGATCCAATATAGAAGAGTTGAATGCAACTACCCTGGACGTAAAATTGCTTTTCGTATTGATTCTGGCTCCAATCCAAATTATTTTGCTTCCCTGATCGAATATGAAGATGGAGATGGTGACCTCGCAAAAGTTGAACTCAGTCAGGCTCTTGACTCAGATTCATGGCTTTCCATGCAGCAGTTATGGGGTGCAGTATGGAAGCTTGACTCAGGCTCAGCGCTAAGAGCTCCTTTCTCTCTCCGGCTAACTGCACTTGACTCCGGCAAGACTATTGTCGCTAACAACGTAATCCCGGCAGGTTGGGCACCCGGTCAAACTTACAGATCTGTGGTGAATTTTGACACATAA 828 0.4698 MASTILQQALSLCTLAPLIFLILVNPCSCLNMRKLLNSSYSPYASGWTQATATWYGSPDGAGSDGGACGYGGAVDQAPFSAMISAGGPNLYDGDKGCGACYEVMCTGKANALCSGNPVKVVLTDNCPGCGDDHFDLSGTAFGALASSGQSSRLRDAGILQIQYRRVECNYPGRKIAFRIDSGSNPNYFASLIEYEDGDGDLAKVELSQALDSDSWLSMQQLWGAVWKLDSGSALRAPFSLRLTALDSGKTIVANNVIPAGWAPGQTYRSVVNFDT* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01059 275 Pfam Expansin C-terminal domain 175 258 IPR007117 -
Pte11g01059 275 Gene3D - 170 273 IPR036749 -
Pte11g01059 275 SMART dpbb_1 83 163 IPR007112 -
Pte11g01059 275 SUPERFAMILY Barwin-like endoglucanases 38 172 IPR036908 -
Pte11g01059 275 PANTHER EXPANSIN-B3 22 273 - -
Pte11g01059 275 Gene3D - 33 169 IPR036908 -
Pte11g01059 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Pte11g01059 275 SUPERFAMILY PHL pollen allergen 173 269 IPR036749 -
Pte11g01059 275 PRINTS Major pollen allergen Lol pI signature 107 117 IPR005795 GO:0005576|GO:0019953
Pte11g01059 275 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Pte11g01059 275 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Pte11g01059 275 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Pte11g01059 275 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Pte11g01059 275 Pfam Lytic transglycolase 84 163 IPR009009 -
Pte11g01059 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 173 IPR007112 -
Pte11g01059 275 CDD DPBB_EXPB_N 47 168 - -
Pte11g01059 275 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Pte11g01059 275 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Pte11g01059 275 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Pte11g01059 275 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Pte11g01059 275 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Pte11g01059 275 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01059 Pte-Chr11 26951708 26953883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01059 25 273 Expansin Gene Family AT1G65680 60.558 1.59e-109 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01059 - - cill:122292508 375.941