Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00976 ATGAATCGGTTTTGCCCTGAGAAATATCTGGGTGAAATCTTCTGGGATGTTGAGGTCGATCCATCTGAAAACCGAAGTGCTTTTGTTACATATAAAGAGCAACCCAGAATTGAATTTCATGGACCAAACTCCAAGAATGTGAATAAGAAGTTGATTGAGTTCGTGACGAGAAGTTGGCCAGTGGAGAAGAACGAGGCAGCTGAGTTTGAGGAGAGGTCTTTTAGGCATAAGATCAATGAAAGGATGAGAAGGCAGAGACAGAAGCAGGGTTGTTTAGCTTTGCATTCATTGTTACCACATGGAACAAAGAGTGATACTAGTTCTATAATTCAAACAGCAACCAAGGAGATTCAAAGGCTGCAAGCACATAGACATGTGCTGCTGACGAAAAAGGATGAGCTTGAAGCTGCTTCTGTAAAACCAGTGGAAAGTAATGAAGCTGTTGTTGAAGGAGCCATAATTCAATTAAGAGTGCTCAATCCAACATTTGGGTTTGATTATATTATCGACACTCTTAAATGCTTGAAGGAATTGGGTGTTGATGCTAAAAACATCAAATCAAGTTTCTCATCTGAACAGCTCTTTGGGGTGTTAGATATAGAAACCATGATTGCTGCTGATAAGGACAAAGTAAAATGCGAGGTGGAGAGAAGAGTACAGCACGAAGTGCCGAGGAAACTTCTGTCCGGTTTTGACGATGATAAAGTAAGGAAGTGA 717 0.4073 MNRFCPEKYLGEIFWDVEVDPSENRSAFVTYKEQPRIEFHGPNSKNVNKKLIEFVTRSWPVEKNEAAEFEERSFRHKINERMRRQRQKQGCLALHSLLPHGTKSDTSSIIQTATKEIQRLQAHRHVLLTKKDELEAASVKPVESNEAVVEGAIIQLRVLNPTFGFDYIIDTLKCLKELGVDAKNIKSSFSSEQLFGVLDIETMIAADKDKVKCEVERRVQHEVPRKLLSGFDDDKVRK* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00976 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 135 IPR036638 GO:0046983
Pte11g00976 238 Coils Coil 117 137 - -
Pte11g00976 238 Pfam Helix-loop-helix DNA-binding domain 75 121 IPR011598 GO:0046983
Pte11g00976 238 Gene3D - 62 137 IPR036638 GO:0046983
Pte11g00976 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Pte11g00976 238 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 22 223 IPR044658 -
Pte11g00976 238 CDD bHLH_AtbHLH_like 76 127 IPR045239 -
Pte11g00976 238 SMART finulus 77 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00976 Pte-Chr11 21505058 21506081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00976 14 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 33.990 2.50e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte11g00976 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00976 - - qsa:O6P43_021477 219.935