Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00975 ATGGCGGACGTTGAGGCTGATGTTGCGACCGGACTGCCGAAGAAGAGAACATTTAAGAAGTTCAGCTTCAGGGGTGTCGATTTGGATGCTCTCCTTGACATGTCTACTGAAGAGCTTGTCAAAATGTTCAATGCCAGAGCTCGCAGAAGAGAAGCTCCCCCTGGTGAGAAGCCCGAACCAGTTCGAACCCACCTTCGCAATATGATAATTGTGCCCGAGATGATTGGAAGCATCATTGGTGTATACAATGGTAAGACCTTCAATCAGGTTGAAATTAAGCCTGAAATGATTGGTCATTACTTGGCGGAGTTCTCCATTTCATACAAGCCTGTCAAGCATGGTAGACCTGGTATTGGTGCCACTCACTCTTCAAGGTTTATTCCTCTCAAGTGA 393 0.4656 MADVEADVATGLPKKRTFKKFSFRGVDLDALLDMSTEELVKMFNARARRREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00975 130 Gene3D 30s Ribosomal Protein S19; Chain A 9 130 IPR023575 GO:0003735|GO:0005840|GO:0006412
Pte11g00975 130 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 50 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pte11g00975 130 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 130 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pte11g00975 130 FunFam 40S ribosomal protein S15 47 130 - -
Pte11g00975 130 NCBIfam 30S ribosomal protein S19 49 130 IPR005713 GO:0003735|GO:0006412|GO:0015935
Pte11g00975 130 ProSitePatterns Ribosomal protein S19 signature. 83 107 IPR020934 GO:0003723
Pte11g00975 130 Pfam Ribosomal protein S19 47 113 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pte11g00975 130 SUPERFAMILY Ribosomal protein S19 47 114 IPR023575 GO:0003735|GO:0005840|GO:0006412
Pte11g00975 130 Hamap 30S ribosomal protein S19 [rpsS]. 14 119 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pte11g00975 130 PRINTS Ribosomal protein S19 family signature 63 82 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pte11g00975 130 PRINTS Ribosomal protein S19 family signature 95 110 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pte11g00975 130 PRINTS Ribosomal protein S19 family signature 83 95 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00975 Pte-Chr11 21502642 21503793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00975 1 131 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 75.658 1.52e-75 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00975 K02958 - qsa:O6P43_006944 232.261