Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00960 ATGCAAAGCAGCACCGCAGGGCAACTTGTTGGCTCTGAAATTCATGGGTTCCATACATTACAAGAGCTAGATGTTGGCAACATGATGGAAGAAGCTAAAAGACGGTGGCTTCGCCCCAATGAAATCCTTGCTGTACTGTGTAATTATAAGTATTTCACCATCAACGCCAAGCCAGTAAACTTGCCAAAAAGTGGAACAATAGTTTTATTTGACCGCAAGATGCTGAGAAACTTCCGTAAGGATGGTCACAACTGGAAGAAAAAAAATGATGGGAAGACTGTGAAAGAAGCGCATGAACACTTAAAAGTTGGTAATGAAGAAAGGATTCATGTTTACTATGCTCATGGCCAAGATAATTCAAGCTTTGTTCGGAGATGTTACTGGCTACTTGATAAGAGTCTGGAACATATTGTACTTGTCCACTATCGTGACACACAGGAGTTACAAGGTTCGCCAGTTAGGCAAGTAAATTCAAGTTCTAGTTCTCACTCTGGTCCAACTGCTCCAGGCTTTATATCAGAAGAATTTGATTCCGGGGCTGAAACTACTACTCCTTGTGGAGAAAAAGCAACCTTAGAAGCTCATGACAATCTATGCATCAGAAATTATCATCAAAGACTTCATGAAATCAATACACTTGAATGGGATGAGTTACTTTCTGCAAATGATCCTAACAATTCAGCTACAGTAAGAGGGGGCAAAGTAGATTCATTTGAAACACAGAAACAAATTGCGCTGGGTGGCCCTGGAAACAGAAGTCCACCTGTCGATGATATATCTTATCCAAAGTATGGGACCAATTGCAATTGTAATTTTCCTGAAAGTGTCTGTACTGAGACTGTCTTTCACCAGGAAGCTCCAGAGGTTCAGAGTGTGGATCCTTTGGCTACTCTTCTTAATGATGGGTTGCAAAGCCAGGATAGTCTCGGAACATGGATAAATAATATCATTGTAGAATCTCCTTGTTGTACAGAGACAACCCTTGAACCCTCAGTTGGCAATGACAATTACTCCTCTATGGGGATAGAACATTTTCAACTTTCTCTGCCAGAACAAATATTGCATGTTACAGATATCTCACCAGTGTGGGCATACACAACTGAGAAAACAAAGATTTTGATCACAGGACTTTTCTGCAAAGGAAGTTTGAATCTTTCAAAGTTGAATCTATTTTGTGTCTTGGGAGATGCACATATTCCTGTAGAAACTGTACAAGCTGGGGTATATCGTTGTGTACTGCCACCTCACCCTCCTGGATTTGTCAATTTCTATTTGAGCTTAGATGGCCATAAGCCCATAAGCCAAGTTCTGAATTTTGAGTATCGCACGCCTGTAACACTTGATGTCTTAACATCTGTAGAAGACAGGAACAAGTGGGATGATTTCCGACTGCAGATGAGGCTTGCTAAATTGTTGTTCACCAAATCCAAGAACCTCGATATGATGTCTACAAACTCATCATCTACTGCAATCGAGAAGGCTAGGAAGTTTGCTTTAAGAACCAATTATATTTCCAATCGATGGGATAGCTTTGTGAATGCAACAGTTGAGTGCAAAGTCTCACTTCCACAAGCAAAAGACGGTTTGTTTGAGCTTACTCTGAAAAATAGACTAAAGGAGTGGCTACTGGAACGAATTGTATTAGATTGCAAGATAACTGAATATGATTCGCAAGGTCAAGGAGTGATCCATCTGTGTGCAATTCTGGGATATACGTGGGCTATCAATCTCTACTCATGGTCGGGCTTCTCTTTGGATTTCCGTGACAAACATGGATGGACAGCTCTGCACTGGGCAGCATATTTGGGAAGGGAGAAAATGGTTGCAGTTTTATTGTCGGCTGGTGCAAAGCCCAACTTAGTCACTGATCCCACATCTCGAAACCCTGGAGGTTATACTGCTGCTGATCTTGCATATATGAAGGGTTATGATGGCTTAGCAGCCTACCTTTCTGAGAAAGCGTTGGTTGAACAGTTCCAGGACATGAGTATAGCTGGAAATATCAGTGGCACGCTGAAAACCAGCACAACTTATACTGTAGATTCTTCCAATCTTACTGAGGATGAGTTGTTTCTGAAGGACACATTAGCTGCTTATCGAATAACTGCTGAGGCAGCAGGGCGCATACAATCTGCATTCAGAGAGCGTTCTTTCAAATTACGAGCTAAAGCTGTTGAGATTTCAAATCCTGAGGATGAGGCACGTAGTATAGTTGCTGCAATGAAGATTCAACATGCCTTCCGCAACTATGAGTCTCGGAAAATGATGGCAGCTGCTGCCCGTATCCAATATAGGTTCCGCTCATGGAAGCTTCGGCAAGAGTTCCTCAACATGCGTCGCCAAGCCATCAAGATTCAGGCTGCTTTTCGAGGCTTCCAAGTGCGGAAGCAGTACCGAAAAATACTGTGGTCAGTCGGTGTGCTTGAGAAAGTGATTCTGCGCTGGCGTTTTAAGAGAAGAGGTTTTCGAGGTCTTCAAGTTAATACTGCAGAAGTTGTTGAAGAGCAGAAGCAGGAAAGTGATACTGAGGAAGAATTCTATCGCACTAGCCGCAAACAAGCTGAAGAACGTGTTGAGAGATCTGTTGTACGGGTACAGGCAATGTTCCGCTCCAGAAAGGCTCAGGAAGAGTACAGGAGAATGAAGCTTGCTCACAATAAGCTTAAATATGAAGAAGTCGTTGATCCTTATATGGAGATTGAAATGTGA 2709 0.4241 MQSSTAGQLVGSEIHGFHTLQELDVGNMMEEAKRRWLRPNEILAVLCNYKYFTINAKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSSFVRRCYWLLDKSLEHIVLVHYRDTQELQGSPVRQVNSSSSSHSGPTAPGFISEEFDSGAETTTPCGEKATLEAHDNLCIRNYHQRLHEINTLEWDELLSANDPNNSATVRGGKVDSFETQKQIALGGPGNRSPPVDDISYPKYGTNCNCNFPESVCTETVFHQEAPEVQSVDPLATLLNDGLQSQDSLGTWINNIIVESPCCTETTLEPSVGNDNYSSMGIEHFQLSLPEQILHVTDISPVWAYTTEKTKILITGLFCKGSLNLSKLNLFCVLGDAHIPVETVQAGVYRCVLPPHPPGFVNFYLSLDGHKPISQVLNFEYRTPVTLDVLTSVEDRNKWDDFRLQMRLAKLLFTKSKNLDMMSTNSSSTAIEKARKFALRTNYISNRWDSFVNATVECKVSLPQAKDGLFELTLKNRLKEWLLERIVLDCKITEYDSQGQGVIHLCAILGYTWAINLYSWSGFSLDFRDKHGWTALHWAAYLGREKMVAVLLSAGAKPNLVTDPTSRNPGGYTAADLAYMKGYDGLAAYLSEKALVEQFQDMSIAGNISGTLKTSTTYTVDSSNLTEDELFLKDTLAAYRITAEAAGRIQSAFRERSFKLRAKAVEISNPEDEARSIVAAMKIQHAFRNYESRKMMAAAARIQYRFRSWKLRQEFLNMRRQAIKIQAAFRGFQVRKQYRKILWSVGVLEKVILRWRFKRRGFRGLQVNTAEVVEEQKQESDTEEEFYRTSRKQAEERVERSVVRVQAMFRSRKAQEEYRRMKLAHNKLKYEEVVDPYMEIEM* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00960 902 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Pte11g00960 902 Gene3D - 754 802 - -
Pte11g00960 902 FunFam calmodulin-binding transcription activator 5 521 661 - -
Pte11g00960 902 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Pte11g00960 902 SMART ANK_2a 591 620 IPR002110 GO:0005515
Pte11g00960 902 SMART ANK_2a 630 660 IPR002110 GO:0005515
Pte11g00960 902 ProSiteProfiles IQ motif profile. 739 765 IPR000048 GO:0005515
Pte11g00960 902 MobiDBLite consensus disorder prediction 149 168 - -
Pte11g00960 902 MobiDBLite consensus disorder prediction 149 185 - -
Pte11g00960 902 SMART CG_1_2 28 146 IPR005559 GO:0003677
Pte11g00960 902 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Pte11g00960 902 SUPERFAMILY E set domains 356 442 IPR014756 -
Pte11g00960 902 SMART iq_5 754 776 IPR000048 GO:0005515
Pte11g00960 902 SMART iq_5 857 879 IPR000048 GO:0005515
Pte11g00960 902 SMART iq_5 777 799 IPR000048 GO:0005515
Pte11g00960 902 ProSiteProfiles IQ motif profile. 778 802 IPR000048 GO:0005515
Pte11g00960 902 ProSiteProfiles IQ motif profile. 859 887 IPR000048 GO:0005515
Pte11g00960 902 ProSiteProfiles Ankyrin repeat region circular profile. 591 619 - -
Pte11g00960 902 Pfam Ankyrin repeats (3 copies) 550 620 IPR002110 GO:0005515
Pte11g00960 902 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 885 - -
Pte11g00960 902 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Pte11g00960 902 SUPERFAMILY Ankyrin repeat 548 652 IPR036770 -
Pte11g00960 902 FunFam Calmodulin-binding transcription activator 2 754 802 - -
Pte11g00960 902 Gene3D Immunoglobulins 350 445 IPR013783 -
Pte11g00960 902 Gene3D - 530 661 IPR036770 -
Pte11g00960 902 Pfam IQ calmodulin-binding motif 780 799 IPR000048 GO:0005515
Pte11g00960 902 Pfam IPT/TIG domain 355 441 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00960 Pte-Chr11 19951759 19959689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00960 28 891 CAMTA Transcription Factor Family AT3G16940 54.598 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pte11g00960 CG-1 2.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00960 K21596 - qsa:O6P43_021827 1186.4