Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00955 ATGTCGTTGAAACCAAGTGCCAGGACGGAGGTTCGACGGAACCGATACAAGGTCGCCGTAGATGCGGACGAGGGTCGCAGGCGGCGAGAGGACAATATGGTCGAGATCCGCAAGAATAAACGTGAAGAGAGCTTGCTGAAGAAGCGTCGTGAAGGGCTTCAAGCTCAGCAGCAGTTTGCTGCTCATCTGCAGACTTCTACTGTTGAGAAAAAGTTGGAGAGTCTTCCTTCAATGGTTGCGGGTGTATTTTGTGACAATAATAATCTGCAACTGGAAGCGACTACACAGTTTCGTAAATTGCTTTCAATTGAGCGTAGCCCTCCTATCGAGGAAGTCATTCAATCCGGGGTCGTTCCAAAATTTGTTGAGTTTCTTATGAGGGAAGATTTTCCTCAGCTTCAGTTTGAGGCCGCTTGGGCTCTGACAAATATAGCATCGGGGACCTCTGAGAACACCAAGGTCGTGATTGATCATGGAGCAGTACCTATTTTTGTGAAGCTACTTAGTTCTCCTAGTGATGATGTTCGAGAGCAGGCTGTATGGGCCTTGGGAAATGTTGCTGGTGACTCGCCTAGGTGTCGCGATCTTGTACTCAGCCATGGAGCATTGATTCCTTTGCTGGCTCAATTGAATGAACATGCTAAGCTTTCAATGCTAAGAAATGCAACATGGACCCTATCAAATTTCTGCAGGGGCAAGCCACAGCCTGCATTTGAGCAGGTGAGACCAGCTCTGCCAGCTCTTGAGCGTCTAGTTCACTCAAATGACGAGGAAGTTCTGACGGATGCTTGTTGGGCACTTTCATACCTTTCTGATGGTACCAATGACAAAATCCAAGCTGTTATTGACGTCGGAGTATGCCCGAGATTGGTCCAGCTTCTCATGCACCCATCTCCTGCTGTACTCATACCTGCTCTCCGCACAGTGGGAAACATTGTGACTGGGGATGATATGCAAACTCAGTGTATAATCAATCATGCTGCACTCCCATGCCTTTCGAGCCTCCTGACACATAATCACAAGAAGAGCATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACAGCAGGCAACACAGATCAGATACAGGCTGTTATTGAAGCTGGTTTAATTGCTCCTCTTGTTAATCTTCTCCAAAATGCTGAGTTTGACATAAAGAAAGAGGCTGCATGGGCAATCTCAAATGCTACATCTGGTGGCAGTCATGACCAAATGAAGTACTTGGTCAGTCAGGGCTGCATAAAGCCTCTATGTGATCTCCTTGTATGCCCCGATCCAAGGATTGTCACTGTTTGTTTAGAAGGATTAGAGAATATTCTCAAGGTTGGGGAAGCTGAGAAGAATCTTGCTAAAACTGAAGTCAACTTGTTTGCTCAGATGATAGATGATGCTGAGGGGTTAGAGAAAATTGAAAATCTGCAGAGTCATGACAACAATGAGATATATGAGAAGGCTGTTAAGATTCTTGAAACTTATTGGTTGGAGGAAGAGGATGAGACCTTGCCACCTGGTGACTCGGTGCAGCCCGGCTTCAACTTTGGAGGGAGTGAGCTTCCAGTTCCAAGTGGTGGATTCAACTTCAGTTGA 1590 0.4616 MSLKPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQAQQQFAAHLQTSTVEKKLESLPSMVAGVFCDNNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPKFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFEQVRPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDVGVCPRLVQLLMHPSPAVLIPALRTVGNIVTGDDMQTQCIINHAALPCLSSLLTHNHKKSIKKEACWTISNITAGNTDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQMKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLAKTEVNLFAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPPGDSVQPGFNFGGSELPVPSGGFNFS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00955 529 Gene3D - 73 495 IPR011989 -
Pte11g00955 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Pte11g00955 529 Gene3D - 11 50 IPR036975 GO:0006606
Pte11g00955 529 SUPERFAMILY ARM repeat 13 499 IPR016024 -
Pte11g00955 529 Coils Coil 434 454 - -
Pte11g00955 529 PANTHER IMPORTIN ALPHA 12 500 - -
Pte11g00955 529 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Pte11g00955 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Pte11g00955 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Pte11g00955 529 FunFam Importin subunit alpha 73 495 - -
Pte11g00955 529 Pfam Atypical Arm repeat 456 502 IPR032413 -
Pte11g00955 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Pte11g00955 529 SMART arm_5 233 272 IPR000225 GO:0005515
Pte11g00955 529 SMART arm_5 148 188 IPR000225 GO:0005515
Pte11g00955 529 SMART arm_5 274 314 IPR000225 GO:0005515
Pte11g00955 529 SMART arm_5 316 357 IPR000225 GO:0005515
Pte11g00955 529 SMART arm_5 105 146 IPR000225 GO:0005515
Pte11g00955 529 SMART arm_5 189 231 IPR000225 GO:0005515
Pte11g00955 529 SMART arm_5 359 399 IPR000225 GO:0005515
Pte11g00955 529 SMART arm_5 402 442 IPR000225 GO:0005515
Pte11g00955 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Pte11g00955 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Pte11g00955 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pte11g00955 529 FunFam Importin subunit alpha 11 50 - -
Pte11g00955 529 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Pte11g00955 529 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Pte11g00955 529 Pfam Armadillo/beta-catenin-like repeat 407 440 IPR000225 GO:0005515
Pte11g00955 529 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Pte11g00955 529 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Pte11g00955 529 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Pte11g00955 529 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Pte11g00955 529 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00955 Pte-Chr11 19871947 19876767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00955 131 391 U-box Gene Family AT3G46510 25.287 9.66e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00955 K15042 - gmx:100792804 957.592