Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00934 ATGAAAGAAGAGTTATCTGGGGAGGGGAAATTTAATGTTTTACTTACTCACTATGATCTGATCATGAGAGATAAAGCATTTCTCAAGAAAATCAACTGGTTTTACTTGATTGTTGATGAAGGGCATCGTTTGAAGAACCACGAATGTGCTCTAGCTAGGACGCTTGACTCAGGCTATCAGATACAACGCAGACTTCTATTGACTGGTACCCCAATTCAAAATAGTCTGCAGGAATTGTGGTCCTTGCTTAATTTTCTCCTCCCAAGCATTTTCAGTTCGGTTCAAAATTTTGAGGATTGGTTTAATGCACCATTTGCCGATAGGGTTGATGTCTCTCTTACAGATGAAGAACAGCTATTGATCATTCGCCGCTTGCATCAGGTAATAAGGCCATTCATATTAAGAAGGAAAAAAGATGAGGTGGAGAAATATCTTCCTGGGAAATCCCAAGTTATACTTAAATGTGATATGTCAGCGTGGCAGAAAGTCTATTACCAGCAAATTACTGATGTTGGAAGAGTTGGATTGGCTAACGGTTCTGGAAAATCAAAAAGTCTGCAGAATCTTACAATGCATCTCAGGAAATGTTGTAATCATCCTTACCTCTTTGTTTTAGACTACAACAACATGTGGCGCAAGGATGAAATTATCAGAGCATCAGGCAAATTTGAACTTCTTGATCGTTTACTTCCGAAACTTCGTAGAGCTGGGCACAGAGTCCTACTTTTCTCTCAAATGACAAAACTGATTGACTTACTTGAAATTTATCTCCAGCTTCACGAGTTTAAGTACCTTAGACTTGATGGAACAACAAAAACTGAGGAAAGAGGGGTATTGCTAAAAAAATTCAATGCATCAGACTCTCCATATTTCATGTTTCTCTTGAGCACACGTGCAGGAGGTCTTGGCCTGAACTTACAAACAGCAGATACTGTTATAATATTTGACAGTGATTGGAATCCTCAAATGGATCAACAAGCTGAGGATCGGGCTCATCGAATTGGGCAAAAGAAAGAAGTGAGAGTTTTTGTCCTCGTCAGTGTGGGATCCATTGAAGAGGTGATCTTAGAGAGAGCAAAGCAGAAGATGGGTATCGATGCGAAAGTCATCCAAGCTGGACTCTTTAACACAACATCAACAGCTCAAGAAAGGAGAGAAATGCTTGAGGAGATCATGCGTAGAGGTACAAGCTCTCTTGGAGCAGATGTTCCGAGTGAAAGAGAAATCAATCGCCTTGCTGCTCGATCTGAGGAAGAGTTCTGGCTATTTGAGAAGATGGATGAAGAGAGAAGGCAAAAGGAAAACTACAGATGTCGCCTTATGGAGGAACATGAACTACCTGAGTGGGTATACTCTACCTCTGATAAAAAGGAAGATAAAAGCAAAAGCTTTGACATTGGTGCTGTCACAGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCTGACACTCTGAGTGATCTACAGTGGATGAAGGCTGTGGAAAATGGAGTGGATATATCAAAGTTTTCCTTAAGAGGTAGAAAAAGGGATGATCTTCCATTATCAGATGGAAAAGCATCTGCTAAACCAGTAGTGGTTGAGGAAAAGGGACATGAATCGAGGGATGATAGTATCCCGTTGGCAAGCGAGGCAACAAGTGAAGATACCTCAAGTTTGGTCCAAACCCCAAAGAGAATTAAGGTTGAAGGAGGAAGTATGCAGAGACATGAAAATGTGAGTGGTGGGGGCAGTGGTTGGAGCGGACAAATGTTCTCATGGAATACTCATAAGAAAAAGAGATCAAGTTATGTTTCCCAAAATTCAAATGGAAAATCGAACTGGAACTGA 1827 0.4078 MKEELSGEGKFNVLLTHYDLIMRDKAFLKKINWFYLIVDEGHRLKNHECALARTLDSGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFSSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQITDVGRVGLANGSGKSKSLQNLTMHLRKCCNHPYLFVLDYNNMWRKDEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTKLIDLLEIYLQLHEFKYLRLDGTTKTEERGVLLKKFNASDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQERREMLEEIMRRGTSSLGADVPSEREINRLAARSEEEFWLFEKMDEERRQKENYRCRLMEEHELPEWVYSTSDKKEDKSKSFDIGAVTGKRKRKEVVYADTLSDLQWMKAVENGVDISKFSLRGRKRDDLPLSDGKASAKPVVVEEKGHESRDDSIPLASEATSEDTSSLVQTPKRIKVEGGSMQRHENVSGGGSGWSGQMFSWNTHKKKRSSYVSQNSNGKSNWN* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00934 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 136 IPR027417 -
Pte11g00934 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 389 IPR027417 -
Pte11g00934 608 MobiDBLite consensus disorder prediction 570 585 - -
Pte11g00934 608 SMART helicmild6 251 335 IPR001650 -
Pte11g00934 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 89 IPR014001 -
Pte11g00934 608 MobiDBLite consensus disorder prediction 510 585 - -
Pte11g00934 608 PANTHER SNF2/RAD54 HELICASE FAMILY 2 532 - -
Pte11g00934 608 MobiDBLite consensus disorder prediction 510 538 - -
Pte11g00934 608 CDD SF2_C_SNF 213 346 - -
Pte11g00934 608 Pfam Snf2-ATP coupling, chromatin remodelling complex 428 490 IPR029295 GO:0042393
Pte11g00934 608 Coils Coil 426 446 - -
Pte11g00934 608 MobiDBLite consensus disorder prediction 539 556 - -
Pte11g00934 608 Pfam Helicase conserved C-terminal domain 222 335 IPR001650 -
Pte11g00934 608 Gene3D - 142 442 IPR027417 -
Pte11g00934 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 225 392 IPR001650 -
Pte11g00934 608 Gene3D - 1 135 IPR038718 -
Pte11g00934 608 SMART SnAC_2 428 490 IPR029295 GO:0042393
Pte11g00934 608 FunFam Probable ATP-dependent DNA helicase CHR12 142 441 - -
Pte11g00934 608 Pfam SNF2-related domain 9 202 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00934 Pte-Chr11 16879975 16882610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00934 220 363 RAD5 or RAD16-like Gene Family AT5G22750 39.726 8.90e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte11g00934 SNF2_N 4.9e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00934 - - qsa:O6P43_021597 1008.82