Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00933 ATGGCGATGGCGATGGCGATGACGACACCTGAGCTCGAAACCCATTCTCAAGAACAACACCCGCAGCAGCAGCAGCAGCTACAGCAAGAGAACGCTTCTTCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTTCCTTTGTAGAACAGACCAAGACTCTGATCTATGCCCTCAATCTAGTCTCTCGTAAACTCCCTCTCCCTACTGACCTCTTTCATTCCGTTTCTTCAATCTATCATGGTCCCCAACACGTCGACTCTATTGCTTCCGATTCCTCTGTCGGTGCTTCTAATCTTGGATCCGATGACACGCCGCTTGATTTGGCGGGTTCGGATGAATTGGAGAATTCTAGACAAGAAGATTTGCTGACAGAGTTAGAGGATGCACTTATGAAGCAACGCTCTAATTGCATGTCTGGTTTTAGGTTACAGAATTTAAAGGAGAAACGCCATCAAAGTCTTATTCAGCATCGGTTGGATGAACTTGAAGGTTTGCCATCAACCACTGGAGAGAACCTGCAGACAAAGTGCCTGATAGAACTGTATGGACTAAAGTTAGCAGATTTGCAGAAGAAAGTTCGGTCTGAAGTAAGTTCTGAATATTGGCTCCAAGTTAATTGTGCCTATCCTGACAGGCAATTGTATGATTGGGGCATGATGAGATTGCAGCGTCCCCCATATGGAGTTGGAGATGCTTTTTCCACGGATGCTGATGATCAGTGGAGAAAGAAGCGTGACACAGAGAGGCTCTCTAGGTTAGAAGAAGAGGCTAAGAATCAAATAGAGATCAGAAAAAGAAAATTCTTTGCTGAAGTGCTTAACACAGTTCGCGAGTTTCAATTACAAAACCAGGCTTCTCTAAAAAGGCGAAAACAGAGGAACGACGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGTGCCACTCGAGCAGAGAAATTGAGGTTCCAAGCCTTAAAGGCCGATGATCAAGAAGCGTACATGAAAATGGTAAAAGAAAGTAAAAATGAACGACTGACATTGCTTCTGGAAGAAACAAATAAGCTGCTTGTAAATTTGGGAGCAGCTGTTCAACGCCAAAAGGACTTGAAGCAATCTGATGGAATTGAACCCTTGGAGGATTCTCAACCTGATACTCCCGATTTGGATGTTTCTAAGGATGGAATTACAAGGGAATCCCCTCTCGAGGAAGATATTGATAATATTGATTCTGACCAAAATGATGCAGATAGTGATTTACTTGAAGGTCAGCGGCAGTACAACTCTGCTATTCATTCCATACAAGAAAAGGTAACAGAGCAGCCCTCAATACTTCAAGGGGGAGAGTTAAGATCATATCAACTAGAAGGACTGCAATGGATGCTTTCATTGTTCAATAACAACCTCAATGGAATTTTAGCTGATGAAATGGGTCTTGGGAAGACGATACAAACTATTTCATTGATAGCATATCTCATTGAACATAAGGGTGTGGCTGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTACCAAACTGGATGAATGAATTCTCAACCTGGGCACCTAGGTAA 1554 0.4459 MAMAMAMTTPELETHSQEQHPQQQQQLQQENASSPPPPPPPPPPPSFVEQTKTLIYALNLVSRKLPLPTDLFHSVSSIYHGPQHVDSIASDSSVGASNLGSDDTPLDLAGSDELENSRQEDLLTELEDALMKQRSNCMSGFRLQNLKEKRHQSLIQHRLDELEGLPSTTGENLQTKCLIELYGLKLADLQKKVRSEVSSEYWLQVNCAYPDRQLYDWGMMRLQRPPYGVGDAFSTDADDQWRKKRDTERLSRLEEEAKNQIEIRKRKFFAEVLNTVREFQLQNQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMKMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDLKQSDGIEPLEDSQPDTPDLDVSKDGITRESPLEEDIDNIDSDQNDADSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIEHKGVAGPHLIVAPKAVLPNWMNEFSTWAPR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00933 517 SUPERFAMILY Formin homology 2 domain (FH2 domain) 35 210 - -
Pte11g00933 517 Coils Coil 116 136 - -
Pte11g00933 517 Gene3D - 411 517 IPR038718 -
Pte11g00933 517 Pfam SNF2-related domain 446 515 IPR000330 GO:0005524|GO:0140658
Pte11g00933 517 PANTHER SNF2/RAD54 HELICASE FAMILY 134 516 - -
Pte11g00933 517 MobiDBLite consensus disorder prediction 89 117 - -
Pte11g00933 517 MobiDBLite consensus disorder prediction 10 31 - -
Pte11g00933 517 MobiDBLite consensus disorder prediction 379 397 - -
Pte11g00933 517 Coils Coil 243 263 - -
Pte11g00933 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 455 517 IPR014001 -
Pte11g00933 517 MobiDBLite consensus disorder prediction 1 48 - -
Pte11g00933 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 516 IPR027417 -
Pte11g00933 517 MobiDBLite consensus disorder prediction 32 48 - -
Pte11g00933 517 MobiDBLite consensus disorder prediction 362 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00933 Pte-Chr11 16875469 16879783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00933 419 512 RAD5 or RAD16-like Gene Family AT1G05120 38.384 7.00e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte11g00933 SNF2_N 6.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00933 - - pcin:129308606 707.597