Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00925 ATGGCCCAGGTTCCAGTTCAGCATCAGAGTGTGATGTCCGGAGCTAATGGTGGTACTACTGTACCAGTCCCCACAGCAGCTGGTGGCCCCAATCAGTTTGTGACGACGTCACTTTATGTTGGGGATCTTGACCAGAACGTAACGGATTCGCAGCTGTACGACCTGTTTAACCAAGTGGGTCAGGTTGTTTCTGTTAGGGTTTGCAGGGATATGACCACCCGGAGATCACTTGGTTATGGTTATGTCAATTATAGCAATCCCCAAGATGCTGCTAGGGCATTGGATATTCTGAGCTTTACTCCTCTCAATTCAAAGACCATTCGAGTAATGTATTCTCATCGTGACCCCAGCATGCGCAAAAGTGGGCTAGGAAATATATTCATCAAGAATCTAGACAAAGCCATCGATCACAAAGCACTACACGACACATTCTCTGCATTTGGGAATATACTCTCTTGCAAGGTAGCTACAGATTCCTCTGGCCAATCGAAGGGTTATGGCTTCGTACAATTTGAAAATGAAGAATCTGCTCAGAAAGCTATTGAGCAGTTGAATGGCATGCTGATGAATGATAAGCAAGTCTATGTGGGGCCATTTTTGCGAAAGCAAGACAGGGAAGGTGCTTCTGATAGGACGAGGTTTAACAATGTTTATGTTAAGAATCTTTCAGAGTCAACCACTGATGAAGACTTGAAGAAAACTTTTGGTGAATTTGGAACTATCACTAGTGCTGTGGTGATGAGGGATGCAGATGGCAAATCTAAATGTTTTGGATTTGTAAACTTCGAGAGTGCTGAAGATGCTGCTAGATCAGTTGAGGGTCTTAATGGCAAAAATTTTGATGGTAAAGAATGGTATGTTGGAAAAGCACAGAAGAAATCTGAAAGGGAAATGGAATTGAAGCTTCAGTTTGAGCAGACTATGAAAGAGGCAGCTGACAAATACCAAGGGGCTAATCTATATGTTAAAAACTTGGACGATACAATTGGTGACGATAAGCTTAAGGAATTGTTTTCACAATTTGGTTCCATTACCTCTTGCAAGGTCATGCGAGATCCAAATGGAATAAGCAGAGGGTCAGGATTTGTTGCATTCTCAACTCCTGAAGAGGCATCTAGAGCGCTTTTAGAGATGAATGGGAAAATGGTTGTTACCAAACCTCTTTATGTTGCTCTCGCTCAAAGGAAAGAAGATAGAAGAGCTAGATTGCAGGCTCAATTTACTCAGATGAGGCCTGTTGCCATAGCTCCATCAGTTGCTCCTCGAGTGCCGATGTACCCCCCTGGTGCTCCTGGAATTGGACAGCAAATATTTTACGGTCAAGCCCCACCTGCTATGATTCCTTCACAGCCTGGATTTGGGTACCAGCAGCAACTTGTGCCAGGTATGAGGCCTGGTGGGTCGCCGATGCCAAACTTCTATGTGCCACTGGTTCAGCAGGGGCAGCAAGGACAGAGACCTGGAGGCAGGCGTGCAGGGGCTCTTCAACAGGTGCACCAGCCTGTTCCCCTGATGCAGCAGCAGATGCTTCCAAGAAACCGTGTCTATCGCTATCCTCCTGGACGCGGTATGCCAGATGCTCCCGTGCCTGGAGTTGGAGGCATGTTTCCCATTCCATATGACATGGGTGGTGTACCTCTCCGTGAGGCTCCAATTTCTCAGCAAATCCCCATTGGGGCTTTGACTTCTGCCCTGGCAAATGCTACTCCTGAGCAGCAAAAGAACAATGCTTGGTGA 1737 0.4623 MAQVPVQHQSVMSGANGGTTVPVPTAAGGPNQFVTTSLYVGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDMTTRRSLGYGYVNYSNPQDAARALDILSFTPLNSKTIRVMYSHRDPSMRKSGLGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFENEESAQKAIEQLNGMLMNDKQVYVGPFLRKQDREGASDRTRFNNVYVKNLSESTTDEDLKKTFGEFGTITSAVVMRDADGKSKCFGFVNFESAEDAARSVEGLNGKNFDGKEWYVGKAQKKSEREMELKLQFEQTMKEAADKYQGANLYVKNLDDTIGDDKLKELFSQFGSITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVTKPLYVALAQRKEDRRARLQAQFTQMRPVAIAPSVAPRVPMYPPGAPGIGQQIFYGQAPPAMIPSQPGFGYQQQLVPGMRPGGSPMPNFYVPLVQQGQQGQRPGGRRAGALQQVHQPVPLMQQQMLPRNRVYRYPPGRGMPDAPVPGVGGMFPIPYDMGGVPLREAPISQQIPIGALTSALANATPEQQKNNAW* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00925 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Pte11g00925 578 SMART rrm2_1 319 391 IPR003954 GO:0003676
Pte11g00925 578 SMART rrm2_1 125 197 IPR003954 GO:0003676
Pte11g00925 578 SMART rrm2_1 216 288 IPR003954 GO:0003676
Pte11g00925 578 Gene3D - 200 300 IPR012677 -
Pte11g00925 578 SUPERFAMILY RNA-binding domain, RBD 215 398 IPR035979 GO:0003676
Pte11g00925 578 CDD RRM3_I_PABPs 214 293 - -
Pte11g00925 578 FunFam Polyadenylate-binding protein 205 300 - -
Pte11g00925 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pte11g00925 578 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 37 575 IPR006515 GO:0003723
Pte11g00925 578 PANTHER RNA BINDING PROTEIN 35 95 - -
Pte11g00925 578 CDD RRM4_I_PABPs 317 395 - -
Pte11g00925 578 Gene3D - 30 124 IPR012677 -
Pte11g00925 578 Gene3D - 125 197 IPR012677 -
Pte11g00925 578 FunFam Polyadenylate-binding protein 125 198 - -
Pte11g00925 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Pte11g00925 578 MobiDBLite consensus disorder prediction 1 26 - -
Pte11g00925 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Pte11g00925 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Pte11g00925 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Pte11g00925 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 386 IPR000504 GO:0003723
Pte11g00925 578 CDD RRM2_I_PABPs 122 198 IPR045305 -
Pte11g00925 578 SUPERFAMILY RNA-binding domain, RBD 36 204 IPR035979 GO:0003676
Pte11g00925 578 SMART rrm1_1 216 288 IPR000504 GO:0003723
Pte11g00925 578 SMART rrm1_1 125 197 IPR000504 GO:0003723
Pte11g00925 578 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pte11g00925 578 SMART rrm1_1 319 391 IPR000504 GO:0003723
Pte11g00925 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 196 IPR000504 GO:0003723
Pte11g00925 578 FunFam Polyadenylate-binding protein 23 124 - -
Pte11g00925 578 FunFam Polyadenylate-binding protein 301 406 - -
Pte11g00925 578 Gene3D - 301 403 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00925 Pte-Chr11 15976519 15981120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00925 1 574 Eukaryotic Initiation Factors Gene Family AT4G34110 67.535 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00925 K13126 - qsu:111992178 954.125