Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00895 ATGCATACTCAAGCAAGAGTTAAGATTGAGAAGGAGTTTGAAGCAAGTTCATATTTTTCCGAAAGGAAGCCAGGCTTTGCTCCTGAACCTATGGAGGGACTTCATGAAACGGGTCCTCCACCATTTCTCAACAAAACTTATGTGATAGTGGATGATCCTTCAACAAATCATGTCGTATCCTGGAGCAGAGGGAACAACAGCTTTATCGTGTGGGATCCCCAAGCCTTTTCCATGAGTCTTCTTCCTAGATACTTCAAGCATAACAATTTCTCCAGCTTTGTCAGGCAGCTCAATACATATGGGTTTAGGAAGGTTGATCCAGATAGGTGGGAGTTTGCCAATGAAGGGTTTCTGAGAGGACAGAAGCATCTCCTAAAAACAATTAGGAGAAGGAAGACACATCAAACTCAAGCTTCGCAAAACGTATTTGATCCATGTGTCGAAGTGGGACGGTTTGGCGTAGATGGAGAAGTTGATAGGTTGAGACGTGACAAGCATGTGTTGATGATGGAGCTTGTGAAGCTTAGACAGCAGCAGCAGAATACCAGAAGATATCTCCAAGCAATGGAGGATAGGTTGAGGAGGAGTGAGATGAAGCAGCAACAGATGATGAATTTCTTAGCAAGAGCTATGCATAATCCAAACTTCGTCCAGCAATTAGTTCAGCACAAGGATAGGAGAAAGGAACTGGAGGAAGCAATCGCCAAGAAGAGAAGGAGGCCTATTAACCAAGGGCCTAGTACTATGGAAGTGGAAGAAGTAATCCAAGTTGAACAGCTTGTGAAGGATGAACCACAGGGTTACAGTGACTTGAATGAGTTTGAAGTTTCTGAACTAGACAAGTTTGATATGGATTTGCAAGGACAAGGTGCGAACCTAAGAAACGTAGAAGAAGAACAAGAACATTTACACCAAGGAATAGAACATCTCGGTAGAGAGAAAGATATTGATGATGGATTTTGGCTACATTTATTGAACGATGGCAAGATTGAAGGAGAAATTAGTGTACTAGGTGTAGATGAAGATCCCGAAGACGTAGATGTATTGGCTGAGCAGCTTGGTTATCTGGCTTCTAGTCCTAACTAG 1086 0.4273 MHTQARVKIEKEFEASSYFSERKPGFAPEPMEGLHETGPPPFLNKTYVIVDDPSTNHVVSWSRGNNSFIVWDPQAFSMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTIRRRKTHQTQASQNVFDPCVEVGRFGVDGEVDRLRRDKHVLMMELVKLRQQQQNTRRYLQAMEDRLRRSEMKQQQMMNFLARAMHNPNFVQQLVQHKDRRKELEEAIAKKRRRPINQGPSTMEVEEVIQVEQLVKDEPQGYSDLNEFEVSELDKFDMDLQGQGANLRNVEEEQEHLHQGIEHLGREKDIDDGFWLHLLNDGKIEGEISVLGVDEDPEDVDVLAEQLGYLASSPN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00895 361 Gene3D - 34 133 IPR036388 -
Pte11g00895 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 258 IPR027725 -
Pte11g00895 361 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte11g00895 361 FunFam Heat shock transcription factor 1 35 132 - -
Pte11g00895 361 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte11g00895 361 Coils Coil 220 240 - -
Pte11g00895 361 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte11g00895 361 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte11g00895 361 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte11g00895 361 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte11g00895 361 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Pte11g00895 361 Coils Coil 158 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00895 Pte-Chr11 12693887 12696157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00895 28 359 HSF AT3G22830 56.354 9.03e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte11g00895 HSF_DNA-bind 6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00895 K09419 - qsu:112016413 488.804