LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g00880	ATGGAGCGTGAAGGAGAGGGTGTAAACTCGAAGTTGGGTGGTAGTGGAGCAGTCAGCAGTAAGGATATGATTTTCAGAGCTGACAAAATTGATCTCAAAAGTTTAGATGCTCAGCTGGAAAAGCACTTGAGCAAGGTTTTGTCCAGAAACGCTGACAGCCAAAGGCCAAAAGAAGACTGGGAGATTGATTTATCTAAGCTGGATATACGATATGTTGTAGCTCATGGAGCCTATGGAACAGTCTACAGGGGCACATATGATAACCAAGACGTTGCAGTGAAGGTGTTGGACTGGGGTGAGGATGGCATTGCTACCACTGCTGAAACTGCTGCTTTACGAGCATCATTTCAACAGGAGGTTGCTGTGTGGAAAAAACTTAATCATCCGAATGTTACAAAATTTGTTGGAGCTTCAATGGGAACTTTAAATCTAAAGATTCCTTCAAAGAACTCTTCAGCTGATGACACGAATCCCCTCCCTTCCAAGGCTTGTTGTGTTGTTGTGGAGTATGTCTCTGGTGGAACCCTAAAACAATACTTGATAAGAAATAGGCGGAAAAAACTTGCTTTTAAGGTTGTCATCCAATTGGCTCTTGACCTTTCGAGGGGTCTTAACTATCTGCATTCAAAGAAGATTGTTCATCGAGATGTCAAAACTGAGAACATGTTGCTAGATGTCAATAGAAATTTGAAGATAGCCGATTTTGGTGTTGCCCGCGTGGAAGCTTTGAATCCAAGAGACATGACCGGGGAAACTGGTACCCTTGGATACATGGCTCCTGAGGTCTTGAACGGTAAGCCTTACAACAGAAGATGTGACGTCTACAGCTTTGGCATATGCTTGTGGGAAATTTATTGCTGTGATATGCCTTTCCCAGATCTAAGCTTTGCTGATATGTCATCAGCGGTTGTTCGTCAGAATTTACGTCCTGAAATTCCTAGATGCTGTCCAAGTTCTTTGGCTAATATCATGCGCAAATGCTGGGATCCAGATGCGTCCAAACGTCCTGAAATGGATGAAGTTGTGAAACTGTTGGAAGCAATTGACGCCAGCAAAGGAGGAGGTATGATACCAGAGGACCAGGCCCCTGGCTGTTTCTGCTTTCCCCCTTCTCGTGGTCCATGA	1125	0.4427	MEREGEGVNSKLGGSGAVSSKDMIFRADKIDLKSLDAQLEKHLSKVLSRNADSQRPKEDWEIDLSKLDIRYVVAHGAYGTVYRGTYDNQDVAVKVLDWGEDGIATTAETAALRASFQQEVAVWKKLNHPNVTKFVGASMGTLNLKIPSKNSSADDTNPLPSKACCVVVEYVSGGTLKQYLIRNRRKKLAFKVVIQLALDLSRGLNYLHSKKIVHRDVKTENMLLDVNRNLKIADFGVARVEALNPRDMTGETGTLGYMAPEVLNGKPYNRRCDVYSFGICLWEIYCCDMPFPDLSFADMSSAVVRQNLRPEIPRCCPSSLANIMRKCWDPDASKRPEMDEVVKLLEAIDASKGGGMIPEDQAPGCFCFPPSRGP*	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g00880	374	Gene3D	Transferase(Phosphotransferase) domain 1	173	355	-	-
	Pte11g00880	374	SUPERFAMILY	Protein kinase-like (PK-like)	53	345	IPR011009	-
	Pte11g00880	374	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	52	350	-	-
	Pte11g00880	374	Gene3D	Phosphorylase Kinase; domain 1	56	148	-	-
	Pte11g00880	374	FunFam	Kinase suppressor of Ras 1	56	151	-	-
	Pte11g00880	374	SMART	serkin_6	67	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte11g00880	374	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	212	224	IPR008271	GO:0004672\|GO:0006468
	Pte11g00880	374	Pfam	Protein tyrosine and serine/threonine kinase	71	345	IPR001245	GO:0004672\|GO:0006468
	Pte11g00880	374	ProSiteProfiles	Protein kinase domain profile.	67	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte11g00880	374	CDD	STKc_MAP3K-like	73	345	-	-
	Pte11g00880	374	FunFam	Serine/threonine-protein kinase HT1	171	356	-	-
	Pte11g00880	374	PRINTS	Tyrosine kinase catalytic domain signature	168	181	IPR001245	GO:0004672\|GO:0006468
	Pte11g00880	374	PRINTS	Tyrosine kinase catalytic domain signature	316	338	IPR001245	GO:0004672\|GO:0006468
	Pte11g00880	374	PRINTS	Tyrosine kinase catalytic domain signature	206	224	IPR001245	GO:0004672\|GO:0006468
	Pte11g00880	374	PRINTS	Tyrosine kinase catalytic domain signature	272	294	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g00880	Pte-Chr11	11614012	11616613	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g00880	13	375	MAP Kinase Kinase Kinase	AT3G22750	78.571	0.0	607

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Pte11g00880		PK_Tyr_Ser-Thr	8.6e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g00880	-		-	tcc:18603033	659.448