Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00877 ATGAGTACAAGGGTTTCTCGATTCACATCAAAGCGACCAGAGAATGGAGAGGACATAGTAGGGAGAGCTGGAGAGACATACGTACAAAGAGCTCAAGCAAGCAAGCAACACATTTTTATCATGGCAGGGAGATTGCCTGGAGTTGGGCTGCCAGCAAGGAAGAGAGTCCACCTCCTCCAGCATGAAGTACATCATGATAAATACAGTAGAGAAGTATATCAAAAGAAATGGTTGGAGTTGGCCGGCTCATCACCTCTGACCCCAGCAACCACTATGGATGAAACTGCTTTAAAGGCTAGGCAAAGGCTGGAACAGAAACTTGGATACTTAGATGCTGCTTTGTCTGATTTAACAGTGAAAATGATGTATGTCATTTTGGGCACTGACTATAAAAGCATCGGGGGTCATCACCACTCATGTAGGCTATGTCAATCCTGCAAAACAAGTCACAATGTGAAGGAAGGAAGATATGAAAAGCATTCAGTAACCCGCAAAAGTAAAAGATATGGTGGGTTTGGCATCATACAATTGGGTAGGTCATGGCTTCTGCAACTAGGCTGGCAAAAGAAAAGGAGAAAGGATGTCTGTGCAGTTTGCTTAGAAGATTTTCATCGTGAGCAGGACCAGCCAATCATGGACCTGCCTTGCTCTCACAAGTATCATAGGGCATGCCTTATTCCTTGGCTTGCAGCTCACCCTCATTGTCCCTATTGCCGCTTCCCTGTTACACTGGCCTCATAA 741 0.4521 MSTRVSRFTSKRPENGEDIVGRAGETYVQRAQASKQHIFIMAGRLPGVGLPARKRVHLLQHEVHHDKYSREVYQKKWLELAGSSPLTPATTMDETALKARQRLEQKLGYLDAALSDLTVKMMYVILGTDYKSIGGHHHSCRLCQSCKTSHNVKEGRYEKHSVTRKSKRYGGFGIIQLGRSWLLQLGWQKKRRKDVCAVCLEDFHREQDQPIMDLPCSHKYHRACLIPWLAAHPHCPYCRFPVTLAS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00877 246 SMART ring_2 196 238 IPR001841 -
Pte11g00877 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 243 IPR013083 -
Pte11g00877 246 SUPERFAMILY RING/U-box 179 244 - -
Pte11g00877 246 CDD RING-H2_PA-TM-RING 195 239 - -
Pte11g00877 246 ProSiteProfiles Zinc finger RING-type profile. 196 239 IPR001841 -
Pte11g00877 246 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 119 240 - -
Pte11g00877 246 Pfam Ring finger domain 195 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00877 Pte-Chr11 11546425 11547698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00877 196 240 C3H Transcription Factor Family AT3G58720 48.889 9.69e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00877 - - qsa:O6P43_021533 159.844