Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00866 ATGGATGGTGGTATGCGATCAGGTGGCCCTTCTGGGGTTTTTGTGAAGAATAGGAGCTCTTCAGGTTGTTTAATTGTTAGAAAGAAAGCAGATGGGGCGGGTGGTGCGGTTGGTTCTTCAAACACTAGAGGTTTCATGGACCTGAGGAAGGAGAAGAAAAGACCTAGTGCTGCTATAAGTGATTCTGATTCAAGTGATGAGTTGGTATTACCTTCTCATAGGCGGGTTGGTCCTGAAACCGTTCGAGGCTGCAATGGTTTGGCTCCTTATGAAAACGGTAATATAGAAGATCGCGGAATTTCCCGAAAGCGTGAGAGGTTGGAGCGAATTAGGCGTGACGAAAATATGTTTGGTATGCGTGCTTTTGAGGGACGGGAAAGGGGACGGAAGAGGGGCAAATTAGATGTTGTTGCTGTTGGTGAATATGACGGCATTGATGGAGATCAGGTTAACATGCGAAGAAGACATTTCGATGATGGTAGAGCTGAATTTGGTGAGAGAAGGCTTATGGGGACGATGTATGTTGGTCGAGGTGGCTTCGATGGGGAATATGAATCTGGTCCAGGCAGACACATGATCGACCAGGGGAGACACCTTTATCCCGATAGGGAAAGTGGTTTACATTTTGGAGACAGTGTTGATCGAAGTAGGTTGAAAATGAATATGGAAGGAGCTGAGGTTCCTTTACCTGTGTTAAGGGAGCAGTACATGGATCGACCTGATGAAGCAATTAGAGTTCAAGGTAAAAACGGTGTCCTTAAGGTGATGGTTAACAAGAAGAAGATGGTTGGTGGGCCACCACTAGATTATGACCGGTTCAGAGCTGTTGAAAGCAGGCAGAGCTTGAGGACAGAAAACAGCTCCGGGAGAAACATGTATATGCATCCTTCGGCATACCCAAAACTTAAACATGTCGATAGACCAGGTACAGTCCTCAGGGAAGAGAAAAATACATTGATTTCGAAGAGACTAATGTCCAGTAAGGAAAGTGACGAGGCTGATCGGAATTCAGATAATAGTGACACATCACTGAAGCTGGGATCAAAGACTGTTCATGCGCAGAAGTCTATCAAAAAGAAAAGTTATGAGGACGAACCAAAATTGAAGAATGTTCAACCTCGCAAAGTTGTGAAGAGGATAACTTCTGAAGATGAACAAATTCCTGCGCAAGAAAAGCTTGTGCCAGGAAGCACGAAAGAAGGAAAAGTTAAACGTGGCAGTGGTACTGAGAAACAAAAGCTACGTGAACGTATTAGAGCAATGCTTCTTACTGCAGGGTGGACGATAGATTATCGACCTAGAAAGAATAGAGATTACCTAGATGCAGTATACATTAATCCCAGTGGAACAGCATACTGGTCAATAATCAAGGCCTATGAAGCACTGCAAAAGCAAATGAATGAAGATAAGGAAGAGGTTAAGCTAAGCGTTGATTCTGGCCCCTCATTTCCACCTATTTCTGATGAGGCACTCAGGCAATTAACAAGGAAAACTCGGAAGAAGTTGGAGAATGAAATGAAGAAAAAGAGAAGGAGTGAAGGTGATAGTGACAGTGCCAAAGAAGCTCATCATAATAAGCATGACGTGGATGGTTTGGATAGTGATAGCCAGGAAGAGAGATTAAGCTCTTTCATTAAGCAGGGGAATAACCCAATGAAAAGTAAAACAAATGAAAATGGTATTGGCAGTTCAAATTCTAGATGTCAGATTTTTTCTGACGAATTAAATGATTGTGCAGTAAAGCCATCTTTTGGATCTGATTCCCATTTTCTACATGGAAGCAAGAGTAGAAAACATAGCAGATGTGCTTTGTTGGTCCGTGGCTCAAATTACCAATCAAATCCAGAAACTGATGACTTTGTTCCATATACTGGAAAACGAACTATTCTTTCATGGCTCATTGATTCTGGCACAGTGGAACTAAGTGAAAAGGTGCTATATTGTCGACGAAAGCGTGTAATGCTAGAGGGTTGGATCACAAGAGATGGCATTCATTGTGGTTGCTGTAGTAAAATACTCACAGTTTCAAAGTTTGAGATTCATGCTGGAAGCAAATTGCGGCAACCATTTCAAAACATATATCTGGAATCTGGAATTTCTCTCTTGCAGTGCCAGATTGATGCATGGAATAGACAAGAGGGTTCTGAAAAAATAAGATTCCACTCTGTAGATGTCGATGGAGATGATCCAAATGATGATACTTGTGGCATTTGTGGAGATGGCGGGGATTTAATTTGCTGTGATAGTTGCCCCTCGACATTTCATCTGAATTGCTTGGGCATTGAGGTGTTTCCACCTGGGGAATGGCACTGCCCAAACTGTACTTGTAGATTTTGTGGACTCACCCGTGGAACTTTCAACCAAGATGATAATGTGTCCATACTCTGCACATGCCACTTGTGTGAGAAAAAATATCATGAATCCTGTATCAAGGAGATATTTTCATCTCCAGTTGATTCCAATATTTCAGATCCTGGCTTTTGTGGAAAAGATTGTAAAGAGCTTTTTGAGCGCCTAAAGAAGTATCTCGGAACCAAACATGAATTGGATGCAGGCTTTTCTTGGTCTCTTATCCGTAAATCTGATGAAGACTCAGATGCTGCTTTTAGAGGAATATCTCAACGCGTGGAGTCTAACTCTAAGCTAGCAGTGGCAGTGACTGTGATGGATGAATGTTTTTTACCCATTGTTGACCGCAGGAGTGGTATCAATCTAATTCAAAATGTTCTATATAATAGTGGATCAAACTTCTATCGATTAAGTTACAGTGGCTTTTACACTGCTGTTCTGGAGAAAGGTGATGAAATTATTTCTGCAGCTTCTATCAGGTTCCATGGTCCTAAATTGGCAGAAATGCCGTTCATTGGAACTCGCCAAATGTATAGGCATCAAGGGATGTGTCGACGACTCTTTTCTGCCCTTGAATTGGCACTGTGCTCTCTCAAGGTTGAGAAACTGATTATTCCAGCGACTGTGGAGGTCATGCACATATGGACAGAAAGTTTTGGTTTCACCCCTTTGGAGGAATCCCTCAAGAAAGATATGAGATCAATGAACATTTTGGTTTTTCCTGGAGTAGATATGTTAGAGAAGCGATTGAGTGCAGTCGAAAAACTAGAGGGGAGTGCTCCTACGTCAGGACATAATCATTTGGTCAGGTCAGATGTGGTAAGTAAATCTGATATAGAGTCCCCTTCTGGCCAAGATGCTCATGGATGTGATGAAGACAGTTCTCATCATTCTAATGAGAGAACTGATGAAGGTGCTGCCTCTAACTCTGATTCCCAAAGTGAAGGTGTGGTCGCAAATGCTGCCTCCATCATTAGTGATTCCTATAAAGGTTCTCACAAGTCTCAGAATCCAGTTACAGCTGATGGAACTCTTTATTCCAAATCGGGGGAAATGCTAGTTGGTTCTGCTTCTGAAAAGCAATGTATGTCTGGCTCCAACAGTGGCCATGCTGCCGTTGAGAAGGCAAAGCTAGTAACGAGTTCTCCTGTCAAGGATAATGATTTGCATTTTTCTCCCCAACATCATGTTGCTTCTTTAAATGATACCGCAATGAATTTGTCAGATGACCTTGAGGCTTCAGTTTGGCAAAAAGAAACTGCATCTTCGGAGCAGAAGGTCGTCGAATCTGATTCTGACTGTAAAACTCGGCCAGCCTCTTCTTCAAAAGATGATTCCCTGGATACTAGAAATGACGGAAATTCTGATTCTCAAGTAGGTGCATGCCCTGAGCCTAATAATGAGAACACCCTTGCAGTTGGAGCAGTTCCGTCATCTGGGCACATATATTCAGATAACATTACCAAGAATGTGGATGAGGAGACAAAAGTTTCTGGTTGTACTGTCAGAGTTGGTGATGAGACTCCAGTGCATATGGGATCTGATTTAAATGTTGCGATATCTGAAGATGCAATTAAAATGCATGATGATTCAGAAGCAACATCTTCTGAAACACATTATGAGGAAAATATGGTTCATGCATTTCCCGGTGACTCTGATGGAACCGACACATTGACGTGA 4029 0.4234 MDGGMRSGGPSGVFVKNRSSSGCLIVRKKADGAGGAVGSSNTRGFMDLRKEKKRPSAAISDSDSSDELVLPSHRRVGPETVRGCNGLAPYENGNIEDRGISRKRERLERIRRDENMFGMRAFEGRERGRKRGKLDVVAVGEYDGIDGDQVNMRRRHFDDGRAEFGERRLMGTMYVGRGGFDGEYESGPGRHMIDQGRHLYPDRESGLHFGDSVDRSRLKMNMEGAEVPLPVLREQYMDRPDEAIRVQGKNGVLKVMVNKKKMVGGPPLDYDRFRAVESRQSLRTENSSGRNMYMHPSAYPKLKHVDRPGTVLREEKNTLISKRLMSSKESDEADRNSDNSDTSLKLGSKTVHAQKSIKKKSYEDEPKLKNVQPRKVVKRITSEDEQIPAQEKLVPGSTKEGKVKRGSGTEKQKLRERIRAMLLTAGWTIDYRPRKNRDYLDAVYINPSGTAYWSIIKAYEALQKQMNEDKEEVKLSVDSGPSFPPISDEALRQLTRKTRKKLENEMKKKRRSEGDSDSAKEAHHNKHDVDGLDSDSQEERLSSFIKQGNNPMKSKTNENGIGSSNSRCQIFSDELNDCAVKPSFGSDSHFLHGSKSRKHSRCALLVRGSNYQSNPETDDFVPYTGKRTILSWLIDSGTVELSEKVLYCRRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLESGISLLQCQIDAWNRQEGSEKIRFHSVDVDGDDPNDDTCGICGDGGDLICCDSCPSTFHLNCLGIEVFPPGEWHCPNCTCRFCGLTRGTFNQDDNVSILCTCHLCEKKYHESCIKEIFSSPVDSNISDPGFCGKDCKELFERLKKYLGTKHELDAGFSWSLIRKSDEDSDAAFRGISQRVESNSKLAVAVTVMDECFLPIVDRRSGINLIQNVLYNSGSNFYRLSYSGFYTAVLEKGDEIISAASIRFHGPKLAEMPFIGTRQMYRHQGMCRRLFSALELALCSLKVEKLIIPATVEVMHIWTESFGFTPLEESLKKDMRSMNILVFPGVDMLEKRLSAVEKLEGSAPTSGHNHLVRSDVVSKSDIESPSGQDAHGCDEDSSHHSNERTDEGAASNSDSQSEGVVANAASIISDSYKGSHKSQNPVTADGTLYSKSGEMLVGSASEKQCMSGSNSGHAAVEKAKLVTSSPVKDNDLHFSPQHHVASLNDTAMNLSDDLEASVWQKETASSEQKVVESDSDCKTRPASSSKDDSLDTRNDGNSDSQVGACPEPNNENTLAVGAVPSSGHIYSDNITKNVDEETKVSGCTVRVGDETPVHMGSDLNVAISEDAIKMHDDSEATSSETHYEENMVHAFPGDSDGTDTLT* 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00866 1342 MobiDBLite consensus disorder prediction 30 69 - -
Pte11g00866 1342 Pfam Tify domain binding domain 657 707 IPR032308 -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 279 370 - -
Pte11g00866 1342 ProSiteProfiles Zinc finger PHD-type profile. 732 777 IPR019787 -
Pte11g00866 1342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 822 IPR013083 -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 1068 1087 - -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 1047 1065 - -
Pte11g00866 1342 Pfam PHD-finger 735 776 IPR019787 -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 45 60 - -
Pte11g00866 1342 CDD PHD2_CHD_II 735 774 - -
Pte11g00866 1342 SMART PHD_3 734 775 IPR001965 -
Pte11g00866 1342 SMART PHD_3 778 833 IPR001965 -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 541 563 - -
Pte11g00866 1342 ProSitePatterns Zinc finger PHD-type signature. 735 774 IPR019786 -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 300 339 - -
Pte11g00866 1342 SUPERFAMILY FYVE/PHD zinc finger 718 775 IPR011011 -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 472 563 - -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 492 540 - -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 356 370 - -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 1040 1100 - -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 1312 1342 - -
Pte11g00866 1342 Coils Coil 492 512 - -
Pte11g00866 1342 MobiDBLite consensus disorder prediction 1204 1251 - -
Pte11g00866 1342 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 919 1010 IPR016181 -
Pte11g00866 1342 PANTHER PHD FINGER PROTEIN 12 356 1151 IPR042163 GO:0003714|GO:0045892
Pte11g00866 1342 MobiDBLite consensus disorder prediction 1207 1234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00866 Pte-Chr11 11116277 11124071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00866 3 1066 PHD Transcription Factor Family AT4G14920 47.102 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte11g00866 TDBD 6.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00866 - - qsa:O6P43_003370 1441.79