Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00855 ATGGGTCAGGCTACTGAGTTGCCTTGCGATGGAGATGGTGTTTGTATGGTCTGCAAGGTCAAACCATCAGAAGAGGAGAACTTGACTTGCAAGACATGTGCAACGCCGTGGCATGTGAACTGTCTCTCTTCTAAGCCCGAGAAACTCACTGATACAATCGAGTGGGAGTGCCCTGACTGTTCTTCCTTGTTCACTGAGGTTTCGCCAGTTTCATATGGAAAGGGTTTGATCAATGGTCCCGTCGAGACGTCCTCTTCCGGTGGCTTGGTCGCTGCGATTCGAGCGATTGAAGCTGATCCGTCTCTGACGGAGAAAGAGAAAGCCAAGAGACGTCAAGAGCTCTTGAGTGGTAAGTCTGAATCGGGTGACGGCGAGAAAGATGGCAATGACGATGGCGGTGATGGTTTGGACATCCTTAACAAGAGTCTGATGTGCGTCTCCTGCATTCAGCTACCTGACAGACCAGTGACGACTCCATGTGGCCACAACTTTTGCCTAAAATGCTTTCAGAAGTGGATAAACCAATCCAAAGATTCTTGCATGAAATGCCGCAAAAAAATTCCCCCTGCCATGGCAAAGAACCCTCGCATCAACTCTGCTCTTGTTTCTGCCATTCGTTTGGCAAAAATGTCAAAGAATGTTGTAAATGGAGGCCCATCCAGAGTCTACCATTTTATCCACCAGCAAGACAGGCCTGACAAGGCTTTTACGACTGAGCGTGCGCAGAAAAGTGGAAAAGCCAATGCTGCCAGTGGTAAAATTTTTGTGACTGTGCCTCAAGATCATTTTGGGCCAATTCCAGCCATATATGATCCGTTGAGAAACCAAGGCGTTATGGTAGGGGAATGCTGGGAGGACAGGCTGGAGTGCCGGCAATGGGGTGTCCACTTTCCTCATGTTGCTGGTATAGCTGGTCAGTCCGATTATGGTGCGCAATCTGTGGTTCTATCTGGAGGTTATATTGATGATGAGGATCATGGAGAGTGGTTCCTCTACACGGGAAGTGGAGGTAGGGATCTTAGTGGGAACAAGAGAACAAACAAAGACCAGTCCTTCGACCAAACCTTTGAGAAATATAACAAGGCTCTCCAAGTTAGTTGTCTCAAAGGCTATCCGGTTCGGGTTGTCAGGTCTCATAAAGAGAAACGATCAGCGTACGCCCCGGAAAAAGGTTTGCGATATGATGGAACTTACAGGATCGAAATGTGTTGGAGGAAAGTGGGTAATCAGGGTTTCAAGGTCTGTCGTTACTTGTTCGTTAGATGTGACAACGATCCTGCACCATGGACAAGTGATGAGCATGGGGATCGACCTAGAAAGCTGCCAAATATTTCAGAGCTGAAAAAGGCAACCGATTTAAGTGAGAGAAAGGGCAGTCCATCTTGGGACTTTGACGAACAAGATTTGTGCTGGAAATGGAAAAAGCCTCCACCTCCTAGCAAGAAGCCAGTAGCAAGCCAGGATCCTGAGACGTTAAAATTAGCAAGGCGAGCTATAAGAAGAACACAACAAACATCTGTTAGAGATAGATTGCTACGAGAATTTAGCTGCTTACTGTGTAAGAAGGTCATGGAGCTACCCGTGACGACACCATGTGCTCATAATTTCTGCAAGTCTTGTCTGGATGCTGCATTTGCTGGTCGTGCAGCTGTGAGGGACAGAAGTAGAGGTGGAAGATCACTGCGTGCACAAAAGAACGTGCTGAATTGTCCTTCTTGCCCAATGGACATTTCTGATTTTCTTCAAAACATCCAGGTCAACCGGGAATTGCAAGATTTGATTGAATCACTGAAATCTAAGGCTGAAGAGAATGAAAAAGCTGAGGAGTCATCAAATGGCGAGGGAGATGCTAATCCAGAAGAATCTGAGGATGCTGAAGCAAGTACTGGGAAGGATGAAGATGCTGGGTTAAATGTTGGTAGCCCTGAGAAACCTGAGGCCAAGCGCAGAAAAATTGCTGGTGATAAAGGAAGTTCAGATTCTCTAGAGAAGCATGAAAAAGCAATGAATGAGGGAAATAATTCACCGTCAAGTCCTCTAAATGTGCGTTCCGATGGAGACATTGAATGA 2070 0.4662 MGQATELPCDGDGVCMVCKVKPSEEENLTCKTCATPWHVNCLSSKPEKLTDTIEWECPDCSSLFTEVSPVSYGKGLINGPVETSSSGGLVAAIRAIEADPSLTEKEKAKRRQELLSGKSESGDGEKDGNDDGGDGLDILNKSLMCVSCIQLPDRPVTTPCGHNFCLKCFQKWINQSKDSCMKCRKKIPPAMAKNPRINSALVSAIRLAKMSKNVVNGGPSRVYHFIHQQDRPDKAFTTERAQKSGKANAASGKIFVTVPQDHFGPIPAIYDPLRNQGVMVGECWEDRLECRQWGVHFPHVAGIAGQSDYGAQSVVLSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQTFEKYNKALQVSCLKGYPVRVVRSHKEKRSAYAPEKGLRYDGTYRIEMCWRKVGNQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRKLPNISELKKATDLSERKGSPSWDFDEQDLCWKWKKPPPPSKKPVASQDPETLKLARRAIRRTQQTSVRDRLLREFSCLLCKKVMELPVTTPCAHNFCKSCLDAAFAGRAAVRDRSRGGRSLRAQKNVLNCPSCPMDISDFLQNIQVNRELQDLIESLKSKAEENEKAEESSNGEGDANPEESEDAEASTGKDEDAGLNVGSPEKPEAKRRKIAGDKGSSDSLEKHEKAMNEGNNSPSSPLNVRSDGDIE* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00855 689 SUPERFAMILY PUA domain-like 247 442 IPR015947 -
Pte11g00855 689 Pfam RING-type zinc-finger 517 557 IPR027370 -
Pte11g00855 689 CDD RING-HC_ORTHRUS_rpt1 142 188 IPR047498 -
Pte11g00855 689 MobiDBLite consensus disorder prediction 614 628 - -
Pte11g00855 689 SUPERFAMILY RING/U-box 137 209 - -
Pte11g00855 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 72 IPR013083 -
Pte11g00855 689 ProSiteProfiles Zinc finger RING-type profile. 145 184 IPR001841 -
Pte11g00855 689 SMART G9a_1 268 425 IPR003105 -
Pte11g00855 689 MobiDBLite consensus disorder prediction 600 689 - -
Pte11g00855 689 SUPERFAMILY RING/U-box 510 598 - -
Pte11g00855 689 SUPERFAMILY FYVE/PHD zinc finger 6 64 IPR011011 -
Pte11g00855 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 618 IPR013083 -
Pte11g00855 689 Coils Coil 583 610 - -
Pte11g00855 689 FunFam Predicted protein 105 210 - -
Pte11g00855 689 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Pte11g00855 689 MobiDBLite consensus disorder prediction 103 133 - -
Pte11g00855 689 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 244 439 - -
Pte11g00855 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 614 IPR045134 -
Pte11g00855 689 ProSitePatterns Zinc finger RING-type signature. 532 541 IPR017907 -
Pte11g00855 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 212 IPR013083 -
Pte11g00855 689 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Pte11g00855 689 ProSiteProfiles Zinc finger RING-type profile. 517 573 IPR001841 -
Pte11g00855 689 Gene3D - 244 442 IPR036987 -
Pte11g00855 689 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Pte11g00855 689 MobiDBLite consensus disorder prediction 637 670 - -
Pte11g00855 689 Pfam Zinc finger, C3HC4 type (RING finger) 143 187 - -
Pte11g00855 689 SMART ring_2 145 183 IPR001841 -
Pte11g00855 689 SMART ring_2 15 60 IPR001841 -
Pte11g00855 689 SMART ring_2 517 573 IPR001841 -
Pte11g00855 689 Pfam SAD/SRA domain 276 424 IPR003105 -
Pte11g00855 689 SMART PHD_3 14 61 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00855 Pte-Chr11 10805802 10810041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00855 1 603 C2H2 Transcription Factor Family AT5G39550 63.696 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00855 K10638 - qsa:O6P43_017375 951.044