Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00848 ATGAATCGGTTTTGCCCTGAGAAATATCTGGGTGAAATCTTCTGGGACGTTGAAGCTGATCAATCGGAAAATCGAAGTGCTTTTGTTCAATACAAAGAGCAGCCCGGAATTGAATTTCATGGATCAAACTCAAAGAATGTGAATAAGAGGTTGATTGAGTTCATGACGAGACTTCGGCCAGTGGAGAAGAATAGAGAAGCTGAATTTGAGAAGGAGAGGTCTTTTAGGCATACGATGAATGAGAGGATAAGAAGACAGAGACAAAAGCAGGGTTGTTTAGATTTGCATTCATTGTTACCACATGGAACAAAGAGTGATGCTAATTCCATAATTCAAACAGCAGCCAAGGAGATTCGAAGGTTGCAAGAACATAGATATGTGCTGCTGAAGACAAAGGATGAGCTTGAAGCTGCTTCTATCAAGACAGTGAGAAGTGATGAAGCTGCTGTTGTAGGAGATGTAGTTCAATTAAGAGTCCTTAATCCAACATTTGGATTTGATTCTATAATTGACACCCTTAAATGCATAAAAGATTTGGGAATCGATGCTAGAAACATCAAATCAAGTTTCTCGTCTGAAAACCTCTTTGGTTTGTTTTTTTTTTTGGATGGAATGTAA 618 0.3851 MNRFCPEKYLGEIFWDVEADQSENRSAFVQYKEQPGIEFHGSNSKNVNKRLIEFMTRLRPVEKNREAEFEKERSFRHTMNERIRRQRQKQGCLDLHSLLPHGTKSDANSIIQTAAKEIRRLQEHRYVLLKTKDELEAASIKTVRSDEAAVVGDVVQLRVLNPTFGFDSIIDTLKCIKDLGIDARNIKSSFSSENLFGLFFFLDGM* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00848 205 Gene3D - 61 138 IPR036638 GO:0046983
Pte11g00848 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Pte11g00848 205 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 22 193 IPR044658 -
Pte11g00848 205 Pfam Helix-loop-helix DNA-binding domain 76 122 IPR011598 GO:0046983
Pte11g00848 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 135 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00848 Pte-Chr11 10674818 10675573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00848 14 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 35.938 5.41e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00848 - - qsa:O6P43_021477 201.06