Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00842 ATGGAGGAAGGGAAGCAAGTAAGCTCAGAGAATCTTAGCGATGGAAATGATAGATTAGAAGAAGAAGATGACGATGACTTGGGCACTAAGCGTGCTTATCAATGCACGTTTTGTAAAAGGGGTTTCACCAATGCTCAGGCTTTAGGCGGACATATGAACATTCATAGGAAGCAGAGGCCTAAAGCCAAGCATAGCTCGTCGGTGGATTCTGCTCTTGACAACAAAACCTATGAGGAACTCTTTTCTTCCGGATACATAGCTGAAAAAACAAATCATCACTCAGCTTTTCAGCTTGATCAGAGAAGCTACCAGATGCACTGTCGGCCATCTCAATCAAACCCTAGATATCCTCCAGTTTCTTATTCGTTTGAACATAATTTTTTTGCTGCTGCTCCAAGGCCGGCTCAACTTCTGATCAGAGGTATAGATCATAATTGTTTTACTGCTAGTGCTGCAAGGCCTCAACCTTTGATCAGAGGGTTGGATCAAGAGCGTCTGGGTGAAAACTTGAGCCTTGGGATTGGTCATAATCGCGTGGAAGAGAATCAAGAGGGGGTTGGACTTAAGGGTGACATGGAGGTCGATTTGGAACTTCGTCTTGGGTGCCATCCTAGTTAG 618 0.4466 MEEGKQVSSENLSDGNDRLEEEDDDDLGTKRAYQCTFCKRGFTNAQALGGHMNIHRKQRPKAKHSSSVDSALDNKTYEELFSSGYIAEKTNHHSAFQLDQRSYQMHCRPSQSNPRYPPVSYSFEHNFFAAAPRPAQLLIRGIDHNCFTASAARPQPLIRGLDQERLGENLSLGIGHNRVEENQEGVGLKGDMEVDLELRLGCHPS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00842 205 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Pte11g00842 205 MobiDBLite consensus disorder prediction 1 26 - -
Pte11g00842 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Pte11g00842 205 SUPERFAMILY beta-beta-alpha zinc fingers 30 61 IPR036236 -
Pte11g00842 205 SMART c2h2final6 33 55 IPR013087 -
Pte11g00842 205 Gene3D Classic Zinc Finger 18 94 - -
Pte11g00842 205 PANTHER OS07G0101800 PROTEIN 16 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00842 Pte-Chr11 10553479 10554096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00842 33 72 C2H2 Transcription Factor Family AT5G43540 73.171 4.55e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00842 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00842 - - pper:18792505 126.716