Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00825 ATGGCAGACCGCGAGCAGAATACCTTTCCTCCCCAGCGGCAAATCCAAAGGGACTTTCCACATCGAAATCACAAGAAGTTTAATCACGGGCATTTCCCTGGAAAGAAGTTTGCACCTGGGCAGTTTAAATCAAATCCAAATTTCAAGCCAATGCCACCTTCAGGGCCAAATTCAACACCCAATTCTTCTCCAAATCCTTCCCTGTCTGGATTAAAGCGAAAAGAACCTGATGCTGACAATCAAACTCCCCAGCAGCCACAGCCATTAAGTGGCAACACCAATAAACAGGCGAAGACAGATGACTCATATTGCCAAGTCTGCCATGTCTCCTGCTCAGGCAGGCAAGCCTTTCAGCAGCATTTAGTTGGGCGTAAGCACAAGGCAAAAACACAAGGTCACACAAGCTATAAAGGGCCATGGAATTGTGATCAGTGTAAAATTTCCTGCACGTCTGAGAGATTGCTCATGAGTCATTTCCAGGGCCAAGTGCACCAGAATATGCTGAGGAAGTTGGAGTCGAGGAAGACAGAAGGTGGAGAGATGTCCACACAGAGAAAGTATTGCCATTTGTGTAACATTTGGTGCATCGACGAACTGGCCTTTGAACAGCATATTGAAGGAAAAAAGCACATTTTCTCTGTTTTTACTAATGAGATCGAGAAGAAAGCCAGAGATGAAGCTGCAGGGCAGGCTGGAGTAGACCTTAACAGAAGGGCTGGCTGA 723 0.4633 MADREQNTFPPQRQIQRDFPHRNHKKFNHGHFPGKKFAPGQFKSNPNFKPMPPSGPNSTPNSSPNPSLSGLKRKEPDADNQTPQQPQPLSGNTNKQAKTDDSYCQVCHVSCSGRQAFQQHLVGRKHKAKTQGHTSYKGPWNCDQCKISCTSERLLMSHFQGQVHQNMLRKLESRKTEGGEMSTQRKYCHLCNIWCIDELAFEQHIEGKKHIFSVFTNEIEKKARDEAAGQAGVDLNRRAG* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00825 240 SUPERFAMILY beta-beta-alpha zinc fingers 177 211 IPR036236 -
Pte11g00825 240 Gene3D Classic Zinc Finger 171 214 - -
Pte11g00825 240 Gene3D Classic Zinc Finger 135 170 - -
Pte11g00825 240 Pfam Zinc-finger of C2H2 type 140 164 - -
Pte11g00825 240 Pfam Zinc-finger of C2H2 type 103 126 - -
Pte11g00825 240 SMART c2h2final6 102 126 IPR013087 -
Pte11g00825 240 SMART c2h2final6 186 210 IPR013087 -
Pte11g00825 240 SMART c2h2final6 140 164 IPR013087 -
Pte11g00825 240 ProSitePatterns Zinc finger C2H2 type domain signature. 142 164 IPR013087 -
Pte11g00825 240 SMART ZnF_U1_5 183 223 IPR003604 GO:0003676|GO:0008270
Pte11g00825 240 SMART ZnF_U1_5 99 133 IPR003604 GO:0003676|GO:0008270
Pte11g00825 240 SMART ZnF_U1_5 137 171 IPR003604 GO:0003676|GO:0008270
Pte11g00825 240 Gene3D Classic Zinc Finger 90 134 - -
Pte11g00825 240 MobiDBLite consensus disorder prediction 1 97 - -
Pte11g00825 240 MobiDBLite consensus disorder prediction 80 97 - -
Pte11g00825 240 Pfam Zinc-finger double-stranded RNA-binding 187 210 IPR022755 -
Pte11g00825 240 PANTHER OS06G0651300 PROTEIN-RELATED 139 211 - -
Pte11g00825 240 SUPERFAMILY beta-beta-alpha zinc fingers 135 174 IPR036236 -
Pte11g00825 240 SUPERFAMILY beta-beta-alpha zinc fingers 95 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00825 Pte-Chr11 9504436 9505805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00825 27 210 C2H2 Transcription Factor Family AT5G61190 23.276 2.18e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00825 zf-C2H2_jaz 1.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00825 - - qsa:O6P43_001991 152.14