Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00820 ATGGATGAAATTGACGAAGTTGAAGATTACGTCTGGGCTAATGAAGATGGTTCATTGCCATGGGACACATTCAGTCATGTTTTTGACCTTGTGCAGAGTGGAAACAGAGCTTTCCGAGAGAAACACTTTGAGGAGGCAATTGAATTTTACTCAAGAGCTAATCACATCAAAACTGGTGACCCTGTTATTCTTAGCAACCGAAGTGCCGCTTATATCAGGATTTGCCAATTCCTCAAGACTAGATCCCCGTCAGCATCAGAATACAGGCCATTGCGTGGGCTTGATCCTACAACTCATGCGGAACTGGCTCTAAAGGATGCTGAAAAACTGGTTGGACTACGAAGTAACTCACTGAAAGCTTACCTTTTAAAGGCCAATGCACTTTTTCTGTTGGAGAGATATGGGATGGCCCGAGATGTCATTCTTTCAGGCCTTCAATTTGATCCTTTTAGTAATTCTCTTCAAGCTTTTCTTCAAAAATTGGAGATGGCAGCAGCTAGTTTGGCAGGCAAGAGATGCCATGGACAACCTGAGCGTAATGATGAATTTGATTGTACTCTGTGCCTAAAATTACTCTATGAACCCATTACAACCCCTTGTGGACATACCTTTTGCCGCTCATGTCTATTTCAGGCAATGGATAGTGGTAATAGATGCCCATTGTGCCGAACAGTTCTATTTATAAGTCCTCGAACATGTTCCATCAGTGTGACATTGAACAATATTATACAAAGGAACTTCCCAGAGGAGTATGCTGAGAGGAAGTCAGAACAAAAGAATTTGACAAACTTTGGTGCTGATCTGTTGCCTCTTTTTGTCATGGATGTTGTCATCCCATGTCAGAAGTTTCCACTCCATATTTTTGAGCCTCGATATAGACTTATGGTGAGGAGAATTATGGAAGGAAACCGCAGGATGGGAATGGTTATAATTGATTCTACAACCGGTGGAATAGCAGAATTTGGTTGCGAAGTGGAAATCACTGAGTGTGAACCACTTCCAGATGGACGTTTTTACCTTGAGATCGAAAGTCGCCGGAGGTTTCGCATTATCAGGTCTTGGGATCAAGATGGGTATCGTGTAGCAGAGGTTGAGTGGATACAAGATATAATCTCACCAAATGGAACAAAAGAGAGAGATGAATTGCAGGAATTGACAAGTAGTGCAGCAGAATATGCGCAGTCCTGGATTAGAAGGGCTAAAGAAGCAGCAAGAGAAGATCCAAGAAGACTTGACAAACTCCTGAATGGAGAGCTGATGATGCCTACACCTCAAGATCCTGAACCCTTCAGCTTCTGGCTTGCTACTCTGTCAAATCGTAGGCCATCGGAAAGACTAGATCTTCTCCGAATAAGAGACACCAAAGAGATGAAGCAACTCCTATTCCGACTCTACAGCTCCGTGCCCTATAATTCTGGATCATTAAAGTGA 1431 0.4291 MDEIDEVEDYVWANEDGSLPWDTFSHVFDLVQSGNRAFREKHFEEAIEFYSRANHIKTGDPVILSNRSAAYIRICQFLKTRSPSASEYRPLRGLDPTTHAELALKDAEKLVGLRSNSLKAYLLKANALFLLERYGMARDVILSGLQFDPFSNSLQAFLQKLEMAAASLAGKRCHGQPERNDEFDCTLCLKLLYEPITTPCGHTFCRSCLFQAMDSGNRCPLCRTVLFISPRTCSISVTLNNIIQRNFPEEYAERKSEQKNLTNFGADLLPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDSTTGGIAEFGCEVEITECEPLPDGRFYLEIESRRRFRIIRSWDQDGYRVAEVEWIQDIISPNGTKERDELQELTSSAAEYAQSWIRRAKEAAREDPRRLDKLLNGELMMPTPQDPEPFSFWLATLSNRRPSERLDLLRIRDTKEMKQLLFRLYSSVPYNSGSLK* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00820 476 ProSiteProfiles Zinc finger RING-type profile. 185 223 IPR001841 -
Pte11g00820 476 SUPERFAMILY RING/U-box 179 247 - -
Pte11g00820 476 PANTHER RING FINGER PROTEIN 127 19 461 - -
Pte11g00820 476 SMART lon_5 268 467 IPR003111 -
Pte11g00820 476 Gene3D Tetratricopeptide repeat domain 26 164 IPR011990 GO:0005515
Pte11g00820 476 Gene3D - 268 369 IPR046336 -
Pte11g00820 476 ProSiteProfiles Lon N-terminal domain profile. 266 467 IPR003111 -
Pte11g00820 476 CDD RING-HC_LONFs_rpt2 182 226 - -
Pte11g00820 476 SMART ring_2 185 222 IPR001841 -
Pte11g00820 476 SUPERFAMILY TPR-like 32 162 IPR011990 GO:0005515
Pte11g00820 476 SUPERFAMILY PUA domain-like 269 461 IPR015947 -
Pte11g00820 476 ProSitePatterns Zinc finger RING-type signature. 200 209 IPR017907 -
Pte11g00820 476 Pfam Zinc finger, C3HC4 type (RING finger) 185 222 - -
Pte11g00820 476 Pfam ATP-dependent protease La (LON) substrate-binding domain 269 458 IPR003111 -
Pte11g00820 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 265 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00820 178 226 C3H Transcription Factor Family AT1G74990 38.462 4.19e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00820 - - qsa:O6P43_001984 756.133