Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00760 ATGGAAGAAATGTACGGTCTGGCTTCATCTGCTGCGCCTGATTACTCTGATAATGCCTTGATGACGCCGGAGAATCTGATCTTACCGGCGGATTACCAAAGTTTTATGCTTTCTACATCTCATCGGATTCCGATGTTTGGATCCGACAACTTGCTCTCTGCTGCGGCTTCTGCCGCAACTAACGAGCCTGAAGTTACTCATTCAAATATGGCTCCCGAATTTCACAGGCAACAAGATGTATCTGCTGCCATCAAAGCGAAAATCGCTTCACATCCTTGCTATCCTCGTCTCCTTGAAGCTTACATCGATTGCCAGAAGGTGGGAGCACCGCCTGAGATTGTGGGATGGTTGGATGAAATCCGGCGAGAAAACGACCTCCGCGAACGAGACATTTTGTCCACGTGCTACGGATCAGCCGATCCCGAGCTCGATGAATTCATGGAGACATACTGTGAAATGCTGACCAAGTACAAGTCTGATCTATGTCGACCTTTTGATGAAGCTACAACATTCTTGAACAAAATGGAAACGCAGCTCAGTAATCTCACCACCGGAACCTCCGTCTCCACTCTTTCCGATGATGGCGCGGCTTCCTTGGACGAAGATCTTAGTGCTGGAGAGGTTGATAACCAAGATTCCCTAAATACAAGTGAAGACCGAGCTCTAAAAGATAGGCTTCTTAGAAAGTTTGGTAGTCACATTGGTACCCTCAAGCTGGAATTCACTAAAAAGAAAAAGAAAGGGAAACTGCCGAAAGAAGCAAGGCAAGCATTGTTGGAGTGGTGGAATCTGCATTACAAATGGCCATATCCAACTGAAGCTGATAAGATTGCATTGGCTGAAGCTACTGGATTAGACCAGAAACAAATTAACAATTGGTTTATTAATCAGAGGAAGCGACATTGGAAGCCATCAGAGAACATGCAGTTCTCTGTCATGGAGGATATCGCTGGCCGATTCTATACTGATGAATGA 975 0.4574 MEEMYGLASSAAPDYSDNALMTPENLILPADYQSFMLSTSHRIPMFGSDNLLSAAASAATNEPEVTHSNMAPEFHRQQDVSAAIKAKIASHPCYPRLLEAYIDCQKVGAPPEIVGWLDEIRRENDLRERDILSTCYGSADPELDEFMETYCEMLTKYKSDLCRPFDEATTFLNKMETQLSNLTTGTSVSTLSDDGAASLDEDLSAGEVDNQDSLNTSEDRALKDRLLRKFGSHIGTLKLEFTKKKKKGKLPKEARQALLEWWNLHYKWPYPTEADKIALAEATGLDQKQINNWFINQRKRHWKPSENMQFSVMEDIAGRFYTDE* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00760 324 ProSitePatterns 'Homeobox' domain signature. 279 302 IPR017970 GO:0000981|GO:0006355
Pte11g00760 324 Pfam KNOX1 domain 83 125 IPR005540 GO:0003677|GO:0005634
Pte11g00760 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 311 - -
Pte11g00760 324 SMART ELK_2 221 242 IPR005539 GO:0003677
Pte11g00760 324 Pfam KNOX2 domain 138 183 IPR005541 GO:0003677|GO:0005634
Pte11g00760 324 FunFam Homeobox protein knotted-1-like 2 246 308 - -
Pte11g00760 324 SMART KNOX2_2 133 184 IPR005541 GO:0003677|GO:0005634
Pte11g00760 324 SUPERFAMILY Homeodomain-like 243 313 IPR009057 -
Pte11g00760 324 Pfam Homeobox KN domain 261 300 IPR008422 GO:0003677|GO:0006355
Pte11g00760 324 ProSiteProfiles ELK domain profile. 221 241 IPR005539 GO:0003677
Pte11g00760 324 SMART HOX_1 243 308 IPR001356 GO:0003677
Pte11g00760 324 Pfam ELK domain 222 241 IPR005539 GO:0003677
Pte11g00760 324 CDD homeodomain 253 305 IPR001356 GO:0003677
Pte11g00760 324 Gene3D - 240 312 - -
Pte11g00760 324 ProSiteProfiles 'Homeobox' domain profile. 241 304 IPR001356 GO:0003677
Pte11g00760 324 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00760 Pte-Chr11 8731916 8740057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00760 1 325 Homeobox Transcription Factor Family AT1G23380 63.205 1.97e-137 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte11g00760 KNOX2 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00760 - - qsa:O6P43_025268 450.669